Evidence map›Paper›PMID 25723491›Full record

ArticlePloS one2015

The effects of knockdown of rho-associated kinase 1 and zipper-interacting protein kinase on gene expression and function in cultured human arterial smooth muscle cells.

Jing-Ti Deng, Xiu-Ling Wang, Yong-Xiang Chen, Edward R O'Brien, Yu Gui, Michael P Walsh

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Jing-Ti DengSmooth Muscle Research Group and Department of Biochemistry and Molecular Biology, University of Calgary, Alberta, Canada.
Xiu-Ling WangSouthern Alberta Cancer Research Institute Microarray and Genomics Facility, University of Calgary, Alberta, Canada.
Yong-Xiang ChenDivision of Cardiology, Libin Cardiovascular Institute of Alberta, University of Calgary, Alberta, Canada.
Edward R O'BrienDivision of Cardiology, Libin Cardiovascular Institute of Alberta, University of Calgary, Alberta, Canada.
Yu GuiDepartment of Physiology and Pharmacology, University of Calgary, Alberta, Canada.
Michael P WalshSmooth Muscle Research Group and Department of Biochemistry and Molecular Biology, University of Calgary, Alberta, Canada; Hotchkiss Brain Institute and Libin Cardiovascular Institute of Alberta, University of Calgary, Alberta, Canada.
University of Calgary · CALibin Cardiovascular Institute of Alberta · CA

Funding

Canadian Institutes of Health ResearchMedical Research Council MOP-111262
6 · The paper itself

Abstract

Rho-associated kinase (ROCK) and zipper-interacting protein kinase (ZIPK) have been implicated in diverse physiological functions. ROCK1 phosphorylates and activates ZIPK suggesting that at least some of these physiological functions may require both enzymes. To test the hypothesis that sequential activation of ROCK1 and ZIPK is commonly involved in regulatory pathways, we utilized siRNA to knock down ROCK1 and ZIPK in cultured human arterial smooth muscle cells (SMC). Microarray analysis using a whole-transcript expression chip identified changes in gene expression induced by ROCK1 and ZIPK knockdown. ROCK1 knockdown affected the expression of 553 genes, while ZIPK knockdown affected the expression of 390 genes. A high incidence of regulation of transcription regulator genes was observed in both knockdowns. Other affected groups included transporters, kinases, peptidases, transmembrane and G protein-coupled receptors, growth factors, phosphatases and ion channels. Only 76 differentially expressed genes were common to ROCK1 and ZIPK knockdown. Ingenuity Pathway Analysis identified five pathways shared between the two knockdowns. We focused on cytokine signaling pathways since ROCK1 knockdown up-regulated 5 and down-regulated 4 cytokine genes, in contrast to ZIPK knockdown, which affected the expression of only two cytokine genes (both down-regulated). IL-6 gene expression and secretion of IL-6 protein were up-regulated by ROCK1 knockdown, whereas ZIPK knockdown reduced IL-6 mRNA expression and IL-6 protein secretion and increased ROCK1 protein expression, suggesting that ROCK1 may inhibit IL-6 secretion. IL-1β mRNA and protein levels were increased in response to ROCK1 knockdown. Differences in the effects of ROCK1 and ZIPK knockdown on cell cycle regulatory genes suggested that ROCK1 and ZIPK regulate the cell cycle by different mechanisms. ROCK1, but not ZIPK knockdown reduced the viability and inhibited proliferation of vascular SMC. We conclude that ROCK1 and ZIPK have diverse, but predominantly distinct regulatory functions in vascular SMC and that ROCK1-mediated activation of ZIPK is not involved in most of these functions.

Indexed as

ArteriesGene Expression RegulationCell ProliferationCells, CulturedCell SurvivalCluster AnalysisDeath-Associated Protein KinasesGene Expression ProfilingGene Knockdown TechniquesGenetic Association StudiesGenetic Predisposition to DiseaseHumansInterleukin-1betaMuscle, Smooth, VascularMyocytes, Smooth MuscleMyosinsDAPK3 protein, humanDeath-Associated Protein KinasesInterleukin-1betaMyosinsrho-Associated KinasesRNA, MessengerROCK1 protein, human

Identifiers

PMID25723491
PMCPMC4344299
OpenAlexW2017469718

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.