Evidence map›Paper›PMID 25722744›Full record

ArticleGenome medicine2015

Transcriptional profiling defines dynamics of parasite tissue sequestration during malaria infection.

Karell G Pelle, Keunyoung Oh, Kathrin Buchholz, Vagheesh Narasimhan, Regina Joice, Danny A Milner, Nicolas Mb Brancucci, Siyuan Ma, Till S Voss, Ken Ketman and 5 more

Abstract read
In one paragraph

Article in Genome medicine, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed.

  1. Review
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  6. Review
  7. The global transcriptome ofMicrobiology spectrum · 2023
    Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Adapt or Die: Targeting Unique Transmission-Stage Biology for Malaria Elimination.Frontiers in cellular and infection microbiology · 2022
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Stressed Out AboutFrontiers in cellular and infection microbiology · 2021
    Review
  19. Studies of the Parasite-Midgut Interaction RevealFrontiers in cellular and infection microbiology · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Karell G PelleDepartment of Immunology and Infectious Diseases, Harvard School of Public Health, Boston, MA 02115 USA.
Keunyoung OhDepartment of Biostatistics, Harvard School of Public Health, Boston, MA 02115 USA.
Kathrin BuchholzDepartment of Immunology and Infectious Diseases, Harvard School of Public Health, Boston, MA 02115 USA.
Vagheesh NarasimhanDepartment of Biostatistics, Harvard School of Public Health, Boston, MA 02115 USA.
Regina JoiceDepartment of Immunology and Infectious Diseases, Harvard School of Public Health, Boston, MA 02115 USA.
Danny A MilnerDepartment of Immunology and Infectious Diseases, Harvard School of Public Health, Boston, MA 02115 USA ; Department of Pathology, Brigham and Women's Hospital, Boston, MA 02115 USA.
Nicolas Mb BrancucciDepartment of Immunology and Infectious Diseases, Harvard School of Public Health, Boston, MA 02115 USA ; Swiss Tropical and Public Health Institute, 4051 Basel, Switzerland.
Siyuan MaDepartment of Biostatistics, Harvard School of Public Health, Boston, MA 02115 USA.
Till S VossSwiss Tropical and Public Health Institute, 4051 Basel, Switzerland.
Ken KetmanProgram in Cellular and Molecular Medicine, Children's Hospital, Boston, MA 02115 USA.
Karl B SeydelCollege of Osteopathic Medicine, Michigan State University, East Lansing, MI 48825 USA ; Blantyre Malaria Project, University of Malawi College of Medicine, Blantyre, 3 Malawi.
Terrie E TaylorCollege of Osteopathic Medicine, Michigan State University, East Lansing, MI 48825 USA ; Blantyre Malaria Project, University of Malawi College of Medicine, Blantyre, 3 Malawi.
Natasha S BartenevaProgram in Cellular and Molecular Medicine, Children's Hospital, Boston, MA 02115 USA ; Department of Pediatrics, Harvard Medical School, Boston, MA 02115 USA.
Curtis HuttenhowerDepartment of Biostatistics, Harvard School of Public Health, Boston, MA 02115 USA ; The Broad Institute of Harvard and MIT, Cambridge, MA 02142 USA.
Matthias MartiDepartment of Immunology and Infectious Diseases, Harvard School of Public Health, Boston, MA 02115 USA.

Funding

CLINICOPATHOLOGICAL CORRELATES OF CEREBRAL MALARIAR01AI034969 · NIAID · MICHIGAN STATE UNIVERSITY · PI TAYLOR, TERRIE ELLEN · 1996 to 2011
$3.2M
EMBEDDING ETHICS IN A CLINICAL RESEARCH TRAINING PROGRAMT15AI007558 · NIAID · YESHIVA UNIVERSITY · PI MACKLIN, RUTH · 1998 to 2000
$152k
NIAID NIH HHS R01 AI034969NIAID NIH HHS T15 AI007558
6 · The paper itself

Abstract

backgroundDuring intra-erythrocytic development, late asexually replicating Plasmodium falciparum parasites sequester from peripheral circulation. This facilitates chronic infection and is linked to severe disease and organ-specific pathology including cerebral and placental malaria. Immature gametocytes - sexual stage precursor cells - likewise disappear from circulation. Recent work has demonstrated that these sexual stage parasites are located in the hematopoietic system of the bone marrow before mature gametocytes are released into the bloodstream to facilitate mosquito transmission. However, as sequestration occurs only in vivo and not during in vitro culture, the mechanisms by which it is regulated and enacted (particularly by the gametocyte stage) remain poorly understood.

resultsWe generated the most comprehensive P. falciparum functional gene network to date by integrating global transcriptional data from a large set of asexual and sexual in vitro samples, patient-derived in vivo samples, and a new set of in vitro samples profiling sexual commitment. We defined more than 250 functional modules (clusters) of genes that are co-expressed primarily during the intra-erythrocytic parasite cycle, including 35 during sexual commitment and gametocyte development. Comparing the in vivo and in vitro datasets allowed us, for the first time, to map the time point of asexual parasite sequestration in patients to 22 hours post-invasion, confirming previous in vitro observations on the dynamics of host cell modification and cytoadherence. Moreover, we were able to define the properties of gametocyte sequestration, demonstrating the presence of two circulating gametocyte populations: gametocyte rings between 0 and approximately 30 hours post-invasion and mature gametocytes after around 7 days post-invasion.

conclusionsThis study provides a bioinformatics resource for the functional elucidation of parasite life cycle dynamics and specifically demonstrates the presence of the gametocyte ring stages in circulation, adding significantly to our understanding of the dynamics of gametocyte sequestration in vivo.

Identifiers

PMID25722744
PMCPMC4342211

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.