Evidence map›Paper›PMID 25719202›Full record

ArticlePloS one2015

Perturbation of parentally biased gene expression during interspecific hybridization.

Diana Burkart-Waco, Kathie Ngo, Meric Lieberman, Luca Comai

Abstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Genetic and environmental manipulation ofFrontiers in plant science · 2023
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Diana Burkart-WacoThe Genome Center and Section of Plant Biology, University of California Davis, Davis, California, United States of America.
Kathie NgoThe Genome Center and Section of Plant Biology, University of California Davis, Davis, California, United States of America.
Meric LiebermanThe Genome Center and Section of Plant Biology, University of California Davis, Davis, California, United States of America.
Luca ComaiThe Genome Center and Section of Plant Biology, University of California Davis, Davis, California, United States of America.

Funding

Dosage-dependent regulation in hybridizationR01GM076103 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI COMAI, LUCA · 2006 to 2009
$1.0M
NIGMS NIH HHS R01 GM076103NIGMS NIH HHS R01GM076103-01A1
6 · The paper itself

Abstract

Interspecific hybridization often induces epigenetic remodeling that leads to transposon activation, gene expression changes, and loss of imprinting. These genomic changes can be deleterious and contribute to postzygotic hybrid incompatibility. In Arabidopsis, loss of genomic imprinting of PHERES1 and presumed failure of Polycomb Repressive Complex contributes to seed inviability observed in A. thaliana X A. arenosa interspecific hybrids. We used this species pair to further analyze the relationship between parentally biased gene expression and postzygotic hybrid incompatibility using two A. thaliana accessions, Col-0 and C24, with differential seed survival. We found that parentally biased expression was perturbed to a similar degree in both A. thaliana hybrids for PHERES1, HDG3, and six other normally paternally expressed genes. We propose that early genome remodeling and loss of imprinting of seed development genes induces lethality in both compatible and incompatible hybrids.

Indexed as

Genomic ImprintingHybridization, GeneticArabidopsisArabidopsis ProteinsChimeraMADS Domain ProteinsSeedsArabidopsis ProteinsMADS Domain ProteinsPHERES1 protein, Arabidopsis

Identifiers

PMID25719202
PMCPMC4342222

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.