Evidence map›Paper›PMID 25717411›Full record

ArticleAMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science2014

Efficiently mining Adverse Event Reporting System for multiple drug interactions.

Yang Xiang, Aaron Albin, Kaiyu Ren, Pengyue Zhang, Jonathan P Etter, Simon Lin, Lang Li

Abstract read
In one paragraph

Article in AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yang XiangDepartment of Biomedical Informatics, The Ohio State University, Columbus, OH 43210.
Aaron AlbinDepartment of Biomedical Informatics, The Ohio State University, Columbus, OH 43210 ; Department of Computer Science and Engineering, The Ohio State University, Columbus, OH 43210.
Kaiyu RenDepartment of Biomedical Informatics, The Ohio State University, Columbus, OH 43210 ; Department of Computer Science and Engineering, The Ohio State University, Columbus, OH 43210.
Pengyue ZhangCenter for Computational Biology and Bioinformatics, Indiana University, Indianapolis, IN 46202.
Jonathan P EtterDivision of Medicinal Chemistry & Pharmacognosy, The Ohio State University, Columbus, OH 43210.
Simon LinBiomedical Informatics Research Center, Marshfield Clinic Research Foundation, Marshfield, WI 54449.
Lang LiCenter for Computational Biology and Bioinformatics, Indiana University, Indianapolis, IN 46202.

Funding

Institutional Clinical and Translational Science AwardUL1TR000427 · NCATS · UNIVERSITY OF WISCONSIN-MADISON · PI DREZNER, MARC KENNETH · 2012 to 2016
$32.2M
Clinical Importance of Drug-Drug InteractionsR01AG025152 · NIA · UNIVERSITY OF PENNSYLVANIA · PI HENNESSY, SEAN, LI, LANG · 2006 to 2021
$8.1M
A Translational Bioinformatics Approach in the Drug Interaction ResearchR01GM104483 · NIGMS · OHIO STATE UNIVERSITY · PI LI, LANG · 2014 to 2017
$1.5M
NCATS NIH HHS UL1 TR000427NIA NIH HHS R01 AG025152NIGMS NIH HHS R01 GM104483
6 · The paper itself

Abstract

Efficiently mining multiple drug interactions and reactions from Adverse Event Reporting System (AERS) is a challenging problem which has not been sufficiently addressed by existing methods. To tackle this challenge, we propose a FCI-fliter approach which leverages the efforts of UMLS mapping, frequent closed itemset mining, and uninformative association identification and removal. By applying our method on AERS, we identified a large number of multiple drug interactions with reactions. By statistical analysis, we found most of the identified associations have very small p-values which suggest that they are statistically significant. Further analysis on the results shows that many multiple drug interactions and reactions are clinically interesting, and suggests that our method may be further improved with the combination of external knowledge.

Identifiers

PMID25717411
PMCPMC4333704

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.