Evidence map›Paper›PMID 25716912›Full record

ArticleJournal of human genetics2015

Constructive rescue of TFIIH instability by an alternative isoform of XPD derived from a mutated XPD allele in mild but not severe XP-D/CS.

Katsuyoshi Horibata, Sayaka Kono, Chie Ishigami, Xue Zhang, Madoka Aizawa, Yuko Kako, Takuma Ishii, Rika Kosaki, Masafumi Saijo, Kiyoji Tanaka

Open access · bronzeAbstract readCase Reports
PubMed Publisher
In one paragraph

Article in Journal of human genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Assessment of the variant prioritization strategy for genomic newborn screening in the Generation Study.Genetics in medicine : official journal of the American College of Medical Genetics · 2025
    Article
  3. Alternative splicing expands the clinical spectrum of NDUFS6-related mitochondrial disorders.Genetics in medicine : official journal of the American College of Medical Genetics · 2024
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Deep phenotyping of 89 xeroderma pigmentosum patients reveals unexpected heterogeneity dependent on the precise molecular defect.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Katsuyoshi HoribataHuman Cell Biology Group, Graduate School of Frontier Biosciences, Osaka University, Suita, Osaka, Japan.
Sayaka KonoHuman Cell Biology Group, Graduate School of Frontier Biosciences, Osaka University, Suita, Osaka, Japan.
Chie IshigamiHuman Cell Biology Group, Graduate School of Frontier Biosciences, Osaka University, Suita, Osaka, Japan.
Xue ZhangHuman Cell Biology Group, Graduate School of Frontier Biosciences, Osaka University, Suita, Osaka, Japan.
Madoka AizawaDivision of Neonatology, Chiba Children's Hospital, Midori-ku, Chiba, Japan.
Yuko KakoDivision of Neonatology, Chiba Children's Hospital, Midori-ku, Chiba, Japan.
Takuma Ishii1] Division of Clinical Genetics, Chiba Children's Hospital, Midori-ku, Chiba, Japan [2] Department of Pediatrics, Kawaguchi Kogyo General Hospital, Kawaguchi, Saitama, Japan.
Rika KosakiDivision of Medical Genetics, National Center for Child Health and Development, Setagaya-ku, Tokyo, Japan.
Masafumi SaijoHuman Cell Biology Group, Graduate School of Frontier Biosciences, Osaka University, Suita, Osaka, Japan.
Kiyoji TanakaHuman Cell Biology Group, Graduate School of Frontier Biosciences, Osaka University, Suita, Osaka, Japan.
Osaka University · JPChiba Hospital · JPNational Center For Child Health and Development · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mutations in XPD cause xeroderma pigmentosum (XP), XP and Cockayne syndrome (CS) crossover syndrome (XP/CS), trichothiodystrophy and cerebro-oculo-facio-skeletal syndrome (COFS). COFS represents the most severe end of the CS spectrum. This study reports two Japanese patients, COFS-05-135 and COFS-Chiba1, who died at ages of <1 year and exhibited typical COFS manifestations caused by XPD mutations p.[I619del];[R666W] and p.[G47R];[I619del], respectively. Two other cases of severe XP-D/CS (XP group D/CS), XP1JI (p.[G47R];[0]) and XPCS1PV (p.[R666W];[0]), died at ages <2 years. On the other hand, two cases of mild XP-D/CS, XP1NE (p.[G47R];[L461V;V716_R730del]) and XPCS118LV (p.[L461V;V716_R730del];[R666W]), lived beyond 37 years of age. p.I619Del and p.[L461V;V716_R730del] are functionally null; therefore, despite the differences in clinical manifestations, the functional protein in all of these patients was either p.G47R or p.R666W. To resolve the discrepancies in these XPD genotype-phenotype relationships, the p.[L461V;V716_R730del] allele was analyzed and we found that p.[L461V;A717G] was expressed from the same allele as p.[L461V;V716_R730del] by authentic splicing. Additionally, p.[L461V;A717G] could partially rescue the loss of XPD function, resulting in the milder manifestations observed in XP1NE and XPCS118LV.

Indexed as

Cell LineFatal OutcomeFemaleGenetic Association StudiesHumansInfantMaleProtein IsoformsProtein StabilityTranscription Factor TFIIHXeroderma PigmentosumXeroderma Pigmentosum Group D ProteinERCC2 protein, humanProtein IsoformsTranscription Factor TFIIHXeroderma Pigmentosum Group D Protein

Identifiers

PMID25716912
OpenAlexW2044212848

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.