Evidence map›Paper›PMID 25716911›Full record

ArticleJournal of human genetics2015

A new method for SMN1 and hybrid SMN gene analysis in spinal muscular atrophy using long-range PCR followed by sequencing.

Yuji Kubo, Hisahide Nishio, Kayoko Saito

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In one paragraph

Article in Journal of human genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 60 citations in OpenAlex.

  1. Trial
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  7. Observational
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  11. ComplexNeurology. Genetics · 2024
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  13. Review
  14. Frontiers in genetics · 2024
    Article
  15. Article
  16. ClinicalHuman mutation · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Yuji Kubo1] Branch of Genetic Medicine, Advanced Biomedical Engineering and Science, Graduate School of Medicine and Global Center of Excellence (COE) program, Tokyo Women's Medical University, Tokyo, Japan [2] Institute of Medical Genetics, Tokyo Women's Medical University, Tokyo, Japan [3] Technical Research Institute, Toppan Printing Co., Ltd, Saitama, Japan.ORCID 000000030113672X
Hisahide Nishio1] Department of Community Medicine and Social Health Care, Kobe University Graduate School of Medicine, Kobe, Japan [2] Department of Pediatrics, Kobe University Graduate School of Medicine, Kobe, Japan.
Kayoko Saito1] Branch of Genetic Medicine, Advanced Biomedical Engineering and Science, Graduate School of Medicine and Global Center of Excellence (COE) program, Tokyo Women's Medical University, Tokyo, Japan [2] Institute of Medical Genetics, Tokyo Women's Medical University, Tokyo, Japan.
Tokyo Women's Medical University · JPKobe University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Spinal muscular atrophy (SMA) is an autosomal recessive neuromuscular disorder characterized by progressive loss of motor neurons in the spinal cord. Approximately 95% of SMA patients have a homozygous deletion of the survival motor neuron 1 (SMN1) gene, whereas 5% harbor compound heterozygous mutations such as an SMN1 deletion allele and an intragenic mutation in the other SMN1 allele. It is difficult to detect intragenic mutations in SMN1 because of the high degree of homology shared between SMN1 and SMN2. Current methods analyze a restricted region from exon 2a to exon 7 in SMN1. We propose a new, efficient long-range polymerase chain reaction (PCR) method for detecting intragenic mutations in SMN1 (exon 1-8) and hybrid SMN genes. We analyzed 20 unrelated SMA patients using SMN copy number analysis, and the new long-range PCR method followed by sequencing. We thus confirmed a novel mutation in SMN1 exon 1 (c.5C>T) in three patients with SMA type III who also had an SMN1 deletion allele. Moreover, we confirmed three hybrid SMN gene types in eight patients. We report a novel SMN1 mutation responsible for a relatively mild SMA phenotype and three hybrid SMN gene types in patients with SMA type III.

Indexed as

DNA Mutational AnalysisAge of OnsetBase SequenceCase-Control StudiesDNA Copy Number VariationsHumansMuscular Atrophy, SpinalPedigreePolymerase Chain ReactionSequence DeletionSurvival of Motor Neuron 1 ProteinSMN1 protein, humanSurvival of Motor Neuron 1 Protein

Identifiers

PMID25716911
OpenAlexW2052202567

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.