Evidence map›Paper›PMID 25716316›Full record

ArticleThe Journal of biological chemistry2015

Oligomerization of the polycystin-2 C-terminal tail and effects on its Ca2+-binding properties.

Yifei Yang, Camille Keeler, Ivana Y Kuo, Elias J Lolis, Barbara E Ehrlich, Michael E Hodsdon

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Review
  2. Article
  3. Polycystin Channel Complexes.Annual review of physiology · 2023
    Review
  4. Article
  5. Disrupting polycystin-2 EF hand CaJournal of cell science · 2020
    Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Yifei YangFrom the Departments of Laboratory Medicine, Pharmacology, and yifei.yang@yale.edu.
Camille KeelerFrom the Departments of Laboratory Medicine.
Ivana Y KuoPharmacology, and.
Elias J LolisPharmacology, and.
Barbara E EhrlichPharmacology, and Cellular and Molecular Physiology, School of Medicine, Yale University, New Haven, Connecticut 06520.
Michael E HodsdonFrom the Departments of Laboratory Medicine, michael.hodsdon@yale.edu.

Funding

Regulation of polycystin-2 channel activityR01DK087844 · NIDDK · YALE UNIVERSITY · PI BOGGON, TITUS JONATHON, EHRLICH, BARBARA E. · 2010 to 2013
$1.6M
Asymmetric flow FFF and Composition Gradient/Light Scattering SystemS10RR023748 · NCRR · YALE UNIVERSITY · PI FOLTA-STOGNIEW, EWA JOANNA · 2007 to 2007
$271k
A Device for Automating Titration Experiments in High-Resolution NMR SpectroscopyR21RR032351 · NCRR · YALE UNIVERSITY · PI HODSDON, MICHAEL E, KEELER, CAMILLE · 2011 to 2011
$207k
NCRR NIH HHS 1S10RR023748-01NCRR NIH HHS R21 RR032351NCRR NIH HHS R21RR032351NCRR NIH HHS S10 RR023748NIDDK NIH HHS R01 DK087844
6 · The paper itself

Abstract

Polycystin-2 (PC2) belongs to the transient receptor potential (TRP) family and forms a Ca(2+)-regulated channel. The C-terminal cytoplasmic tail of human PC2 (HPC2 Cterm) is important for PC2 channel assembly and regulation. In this study, we characterized the oligomeric states and Ca(2+)-binding profiles in the C-terminal tail using biophysical approaches. Specifically, we determined that HPC2 Cterm forms a trimer in solution with and without Ca(2+) bound, although TRP channels are believed to be tetramers. We found that there is only one Ca(2+)-binding site in the HPC2 Cterm, located within its EF-hand domain. However, the Ca(2+) binding affinity of the HPC2 Cterm trimer is greatly enhanced relative to the intrinsic binding affinity of the isolated EF-hand domain. We also employed the sea urchin PC2 (SUPC2) as a model for biophysical and structural characterization. The sea urchin C-terminal construct (SUPC2 Ccore) also forms trimers in solution, independent of Ca(2+) binding. In contrast to the human PC2, the SUPC2 Ccore contains two cooperative Ca(2+)-binding sites within its EF-hand domain. Consequently, trimerization does not further improve the affinity of Ca(2+) binding in the SUPC2 Ccore relative to the isolated EF-hand domain. Using NMR, we localized the Ca(2+)-binding sites in the SUPC2 Ccore and characterized the conformational changes in its EF-hand domain due to trimer formation. Our study provides a structural basis for understanding the Ca(2+)-dependent regulation of the PC2 channel by its cytosolic C-terminal domain. The improved methodology also serves as a good strategy to characterize other Ca(2+)-binding proteins.

Indexed as

Amino Acid SequenceAnimalsBinding SitesCalciumHumansIon Channel GatingIon TransportModels, MolecularMolecular Sequence DataProtein AggregatesProtein BindingProtein IsoformsProtein MultimerizationProtein Structure, SecondaryProtein Structure, TertiaryRecombinant ProteinsCalciumProtein AggregatesProtein IsoformsRecombinant ProteinsTRPP Cation ChannelsCalciumCalcium-binding ProteinCalcium Intracellular ReleaseEF-hand ProteinsIsothermal Titration Calorimetry (ITC)Nuclear Magnetic Resonance (NMR)Polycystic Kidney Disease

Identifiers

PMID25716316
PMCPMC4400361

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.