Evidence map›Paper›PMID 25714927›Full record

ArticleeLife2015

The genetic architecture of gene expression levels in wild baboons.

Jenny Tung, Xiang Zhou, Susan C Alberts, Matthew Stephens, Yoav Gilad

Open access · goldAbstract read
In one paragraph

Article in eLife, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed
8.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 116 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
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  6. Article
  7. DNA methylation signatures of early-life adversity are exposure-dependent in wild baboons.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  8. Article
  9. Review
  10. The evolution of the human DNA replication timing program.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  11. Article
  12. Article
  13. Distinct gene regulatory signatures of dominance rank and social bond strength in wild baboons.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
    Article
  14. System drift and speciation.Evolution; international journal of organic evolution · 2022
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Where Are the Disease-Associated eQTLs?Trends in genetics : TIG · 2021
    Review
  20. Review

1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Jenny TungDepartment of Human Genetics, University of Chicago, Chicago, United States.
Xiang ZhouDepartment of Human Genetics, University of Chicago, Chicago, United States.
Susan C AlbertsInstitute of Primate Research, National Museums of Kenya, Nairobi, Kenya.
Matthew StephensDepartment of Human Genetics, University of Chicago, Chicago, United States.
Yoav GiladDepartment of Human Genetics, University of Chicago, Chicago, United States.
University of Chicago · USDuke University · US

Funding

THE RANGE OF MALE-FEMALE MORTALITY DIFFERENCESP01AG031719 · NIA · DUKE UNIVERSITY · PI VAUPEL, JAMES W. · 2009 to 2020
$10.2M
Science CoreP2CHD065563 · NICHD · DUKE UNIVERSITY · PI Giovanna M Merli · 2015 to 2026
$5.7M
Natural Selection on Gene Regulation in HumansR01GM077959 · NIGMS · UNIVERSITY OF CHICAGO · PI GILAD, YOAV · 2006 to 2014
$2.9M
Mechanisms and Consequences of Social Connectedness in a Wild Primate PopulationR01AG034513 · NIA · DUKE UNIVERSITY · PI ALBERTS, SUSAN C. · 2009 to 2013
$1.8M
Mapping QTLs Associated with Variation in RNA Decay RatesR01HG006123 · NHGRI · UNIVERSITY OF CHICAGO · PI GILAD, YOAV · 2011 to 2013
$1.3M
NHGRI NIH HHS HG006123NIA NIH HHS AG031719NIA NIH HHS AG034513NICHD NIH HHS P2C HD065563NIGMS NIH HHS GM077959
6 · The paper itself

Abstract

Primate evolution has been argued to result, in part, from changes in how genes are regulated. However, we still know little about gene regulation in natural primate populations. We conducted an RNA sequencing (RNA-seq)-based study of baboons from an intensively studied wild population. We performed complementary expression quantitative trait locus (eQTL) mapping and allele-specific expression analyses, discovering substantial evidence for, and surprising power to detect, genetic effects on gene expression levels in the baboons. eQTL were most likely to be identified for lineage-specific, rapidly evolving genes; interestingly, genes with eQTL significantly overlapped between baboons and a comparable human eQTL data set. Our results suggest that genes vary in their tolerance of genetic perturbation, and that this property may be conserved across species. Further, they establish the feasibility of eQTL mapping using RNA-seq data alone, and represent an important step towards understanding the genetic architecture of gene expression in primates.

Indexed as

Gene ExpressionAnimalsFemaleMalePapioPolymorphism, Single NucleotideQuantitative Trait LociSelection, GeneticSequence Analysis, RNAallele-specific expressionbaboonevolutionary biologyexpression quantitative trait locusgenomicsRNA-seqyellow baboon (papio cynocephalus)

Identifiers

PMID25714927
PMCPMC4383332
OpenAlexW2110260027

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.