Evidence map›Paper›PMID 25714707›Full record

ArticlemBio2015

Novel pseudotaxis mechanisms improve migration of straight-swimming bacterial mutants through a porous environment.

Bitan Mohari, Nicholas A Licata, David T Kysela, Peter M Merritt, Suchetana Mukhopadhay, Yves V Brun, Sima Setayeshgar, Clay Fuqua

Open access · goldAbstract read
In one paragraph

Article in mBio, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
3.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 23 citations in OpenAlex.

  1. Review
  2. Article
  3. Journal of bacteriology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Bitan MohariDepartment of Biology, Indiana University, Bloomington, Indiana, USA.
Nicholas A LicataDepartment of Physics, Indiana University, Bloomington, Indiana, USA.
David T KyselaDepartment of Biology, Indiana University, Bloomington, Indiana, USA.
Peter M MerrittDepartment of Biology, Indiana University, Bloomington, Indiana, USA.
Suchetana MukhopadhayDepartment of Biology, Indiana University, Bloomington, Indiana, USA.
Yves V BrunDepartment of Biology, Indiana University, Bloomington, Indiana, USA.
Sima SetayeshgarDepartment of Physics, Indiana University, Bloomington, Indiana, USA.
Clay FuquaDepartment of Biology, Indiana University, Bloomington, Indiana, USA cfuqua@indiana.edu.ORCID http://orcid.org/0000-0001-7051-1760
Indiana University Bloomington · US

Funding

GLOBAL CONTROL OF DIFFERENTIATION IN CAULOBACTERR01GM051986 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI BRUN, YVES V · 1995 to 2016
$6.0M
Synthesis and properties of a bacterial bioadhesiveR01GM102841 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI BRUN, YVES V · 2012 to 2015
$1.5M
Synthesis and function of a unipolar expolysaccharide in AgrobacteriumR01GM080546 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI FUQUA, WILLIAM C · 2007 to 2011
$1.3M
Aging in appendaged bacteriaF32GM083581 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI KYSELA, DAVID · 2009 to 2011
$144k
NIGMS NIH HHS F32 GM083581NIGMS NIH HHS GM083581NIGMS NIH HHS R01 GM051986NIGMS NIH HHS R01 GM080546NIGMS NIH HHS R01 GM102841
6 · The paper itself

Abstract

unlabelledBacterial locomotion driven by flagella is given directionality by the chemotaxis signal transduction network. In the classic plate assays of migration in porous motility agar, efficient motility is compromised in chemotaxis mutants of diverse bacteria. Nonchemotactic mutants become trapped within the agar matrix. Suppressor mutations that prevent this entanglement but do not restore chemotaxis, a phenomenon designated pseudotaxis, were first reported to arise for Escherichia coli. In this study, novel mechanisms of pseudotaxis have been identified for the plant-pathogenic alphaproteobacterium Agrobacterium tumefaciens. Mutants with chemotaxis mutation suppressor (cms) mutations that impart enhanced migration in motility agar compared to that of their straight-swimming, nonchemotactic parent were isolated. We find that pseudotaxis in A. tumefaciens occurs most commonly via mutations in the D1 domain of the flagellar hook protein, FlgE, but it can also be found less frequently to be due to mutations in the hook length regulator, FliK, or in the motor protein, MotA. Single-cell-tracking studies of cms mutants in bulk medium clearly reveal frequent changes in the direction of swimming, similar to the swimming of strains that are proficient for chemotaxis, but independent of a sensory mechanism. Our results suggest that the tumbling process can be tuned through mutation and evolution to optimize migration through complex, porous environments. IMPORTANCE: Chemotaxis sensory networks control direct bacterial motility by modulating flagellar rotary motion, alternating cellular movement between runs and tumbles. The straight-swimming phenotype of chemotaxis-deficient cells yields nonexpanding colonies in motility agar. Enhanced, chemotaxis-independent spreading, dubbed pseudotaxis, has been observed in Escherichia coli mutants. We have identified novel pseudotaxis mutations in Agrobacterium tumefaciens that alter the flagellar hook structure or motor, leading to randomly occurring reorientations observed in single-cell tracking studies in bulk medium. These directional changes allow the cells to migrate more efficiently than the parent strain through the agar matrix, independently of the chemotaxis process. These findings reveal that tumbling can be tuned for effective navigation in complex porous environments, analogous to the natural habitats for many bacteria, and provide evidence for the strong selective pressure exerted by the external environment on the basal pattern of motility, even in the absence of chemotaxis.

Indexed as

ChemotaxisEnvironmental MicrobiologyLocomotionAgarAgrobacterium tumefaciensCulture MediaFlagellaSuppression, GeneticAgarCulture Media

Identifiers

PMID25714707
PMCPMC4358000
OpenAlexW2124488627

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.