Evidence map›Paper›PMID 25713363›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Mutations in early follicular lymphoma progenitors are associated with suppressed antigen presentation.

Michael R Green, Shingo Kihira, Chih Long Liu, Ramesh V Nair, Raheleh Salari, Andrew J Gentles, Jonathan Irish, Henning Stehr, Carolina Vicente-Dueñas, Isabel Romero-Camarero and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 215 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
215citing papers in PubMed, 1 pooled it
25.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

215 citing papers in PubMed, 1 synthesis or guideline pooled it, 351 citations in OpenAlex.

  1. A genetic profiling guideline to support diagnosis and clinical management of lymphomas.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2024
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155 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 2 countries.

Michael R GreenDivision of Oncology, Center for Cancer Systems Biology, arasha@stanford.edu michael.green@unmc.edu.
Shingo KihiraDivision of Oncology.
Chih Long LiuDivision of Oncology.
Ramesh V NairDivision of Oncology, Division of Radiology.
Raheleh SalariDepartment of Computer Science, and.
Andrew J GentlesCenter for Cancer Systems Biology, Division of Radiology.
Jonathan IrishDivision of Oncology.
Henning StehrStanford Cancer Institute, Department of Medicine, Stanford University, Stanford, CA 94305;
Carolina Vicente-DueñasExperimental Therapeutics and Translational Oncology Program, Instituto de Biología Molecular y Celular del Cáncer, Campus M. de Unamuno s/n, Consejo Superior de Investigaciones Cientificas/Universidad de Salamanca, Salamanca 37007, Spain; Institute of Biomedical Research of Salamanca, Salamanca 37007, Spain; and.
Isabel Romero-CamareroExperimental Therapeutics and Translational Oncology Program, Instituto de Biología Molecular y Celular del Cáncer, Campus M. de Unamuno s/n, Consejo Superior de Investigaciones Cientificas/Universidad de Salamanca, Salamanca 37007, Spain; Institute of Biomedical Research of Salamanca, Salamanca 37007, Spain; and.
Isidro Sanchez-GarciaExperimental Therapeutics and Translational Oncology Program, Instituto de Biología Molecular y Celular del Cáncer, Campus M. de Unamuno s/n, Consejo Superior de Investigaciones Cientificas/Universidad de Salamanca, Salamanca 37007, Spain; Institute of Biomedical Research of Salamanca, Salamanca 37007, Spain; and.
Sylvia K PlevritisCenter for Cancer Systems Biology, Division of Radiology.
Daniel A ArberDepartment of Pathology, Stanford University, Stanford, CA 94305.
Serafim BatzoglouDepartment of Computer Science, and.
Ronald LevyDivision of Oncology, Center for Cancer Systems Biology, Stanford Cancer Institute, Department of Medicine, Stanford University, Stanford, CA 94305;
Ash A AlizadehDivision of Oncology, Center for Cancer Systems Biology, Stanford Cancer Institute, Department of Medicine, Stanford University, Stanford, CA 94305; arasha@stanford.edu michael.green@unmc.edu.
Center for Systems Biology · USStanford University · USUniversidad de Salamanca · ESConsejo Superior de Investigaciones Científicas · ES

Funding

Modeling the Molecular Determinants of Induced Anti-Tumor Immune Responses in Mantle Cell LymphomaU01CA194389 · NCI · STANFORD UNIVERSITY · PI ALIZADEH, ASH ARASH, DAVIS, MARK MORRIS · 2015 to 2019
$3.1M
Genetic Basis of Signaling Heterogeneity in Human Follicular LymphomaR01CA151748 · NCI · STANFORD UNIVERSITY · PI LEVY, RONALD · 2011 to 2015
$2.4M
Targeting the B Cell Receptor Signaling Network in LymphomaR00CA143231 · NCI · VANDERBILT UNIVERSITY · PI IRISH, JONATHAN MICHAEL · 2012 to 2014
$715k
Targeting the B Cell Receptor Signaling Network in LymphomaK99CA143231 · NCI · STANFORD UNIVERSITY · PI IRISH, JONATHAN MICHAEL · 2009 to 2009
$136k
NCI NIH HHS K99 CA143231NCI NIH HHS R00 CA143231NCI NIH HHS R01 CA151748NCI NIH HHS R01CA151748NCI NIH HHS U01 CA194389NCRR NIH HHS S10 RR02933801
6 · The paper itself

Abstract

Follicular lymphoma (FL) is incurable with conventional therapies and has a clinical course typified by multiple relapses after therapy. These tumors are genetically characterized by B-cell leukemia/lymphoma 2 (BCL2) translocation and mutation of genes involved in chromatin modification. By analyzing purified tumor cells, we identified additional novel recurrently mutated genes and confirmed mutations of one or more chromatin modifier genes within 96% of FL tumors and two or more in 76% of tumors. We defined the hierarchy of somatic mutations arising during tumor evolution by analyzing the phylogenetic relationship of somatic mutations across the coding genomes of 59 sequentially acquired biopsies from 22 patients. Among all somatically mutated genes, CREBBP mutations were most significantly enriched within the earliest inferable progenitor. These mutations were associated with a signature of decreased antigen presentation characterized by reduced transcript and protein abundance of MHC class II on tumor B cells, in line with the role of CREBBP in promoting class II transactivator (CIITA)-dependent transcriptional activation of these genes. CREBBP mutant B cells stimulated less proliferation of T cells in vitro compared with wild-type B cells from the same tumor. Transcriptional signatures of tumor-infiltrating T cells were indicative of reduced proliferation, and this corresponded to decreased frequencies of tumor-infiltrating CD4 helper T cells and CD8 memory cytotoxic T cells. These observations therefore implicate CREBBP mutation as an early event in FL evolution that contributes to immune evasion via decreased antigen presentation.

Indexed as

MutationAntigen-Presenting CellsChromatinCREB-Binding ProteinFlow CytometryHistocompatibility Antigens Class IIHumansLymphoma, FollicularNeoplastic Stem CellsPolymerase Chain ReactionChromatinCREB-Binding ProteinCREBBP protein, humanHistocompatibility Antigens Class IIantigen presentationCREBBPexomehierarchylymphoma

Identifiers

PMID25713363
PMCPMC4364211
OpenAlexW2148687964

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.