Evidence map›Paper›PMID 25713167›Full record

ArticleJournal of the National Cancer Institute2015

The role of BPTF in melanoma progression and in response to BRAF-targeted therapy.

Altaf A Dar, Mehdi Nosrati, Vladimir Bezrookove, David de Semir, Shahana Majid, Suresh Thummala, Vera Sun, Schuyler Tong, Stanley P L Leong, David Minor and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of the National Cancer Institute, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed, 108 citations in OpenAlex.

  1. Article
  2. BPTF is essential for vaccine-induced germinal center B cell responses.Journal of immunology (Baltimore, Md. : 1950) · 2026
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  16. Lumbrokinase Extracted fromBiomolecules · 2024
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5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 3 institutions in 1 country.

Altaf A DarCenter for Melanoma Research and Treatment (AAD, MN, VB, DdS, ST, VS, ST, SPLL, DM, JRMIII, RWS, MKS), California Pacific Medical Center Research Institute, San Francisco, CA (AAD, MN, VB, DdS, ST, VS, ST, SPLL, DM, LS, RD, JRMIII, RWS, MKS); Department of Urology, Veterans Affairs Medical Center and University of California San Francisco, San Francisco, CA (SM); Life Technologies, Inc. Carlsbad, CA (PRB).
Mehdi NosratiCenter for Melanoma Research and Treatment (AAD, MN, VB, DdS, ST, VS, ST, SPLL, DM, JRMIII, RWS, MKS), California Pacific Medical Center Research Institute, San Francisco, CA (AAD, MN, VB, DdS, ST, VS, ST, SPLL, DM, LS, RD, JRMIII, RWS, MKS); Department of Urology, Veterans Affairs Medical Center and University of California San Francisco, San Francisco, CA (SM); Life Technologies, Inc. Carlsbad, CA (PRB).
Vladimir BezrookoveCenter for Melanoma Research and Treatment (AAD, MN, VB, DdS, ST, VS, ST, SPLL, DM, JRMIII, RWS, MKS), California Pacific Medical Center Research Institute, San Francisco, CA (AAD, MN, VB, DdS, ST, VS, ST, SPLL, DM, LS, RD, JRMIII, RWS, MKS); Department of Urology, Veterans Affairs Medical Center and University of California San Francisco, San Francisco, CA (SM); Life Technologies, Inc. Carlsbad, CA (PRB).
David de SemirCenter for Melanoma Research and Treatment (AAD, MN, VB, DdS, ST, VS, ST, SPLL, DM, JRMIII, RWS, MKS), California Pacific Medical Center Research Institute, San Francisco, CA (AAD, MN, VB, DdS, ST, VS, ST, SPLL, DM, LS, RD, JRMIII, RWS, MKS); Department of Urology, Veterans Affairs Medical Center and University of California San Francisco, San Francisco, CA (SM); Life Technologies, Inc. Carlsbad, CA (PRB).
Shahana MajidCenter for Melanoma Research and Treatment (AAD, MN, VB, DdS, ST, VS, ST, SPLL, DM, JRMIII, RWS, MKS), California Pacific Medical Center Research Institute, San Francisco, CA (AAD, MN, VB, DdS, ST, VS, ST, SPLL, DM, LS, RD, JRMIII, RWS, MKS); Department of Urology, Veterans Affairs Medical Center and University of California San Francisco, San Francisco, CA (SM); Life Technologies, Inc. Carlsbad, CA (PRB).
Suresh ThummalaCenter for Melanoma Research and Treatment (AAD, MN, VB, DdS, ST, VS, ST, SPLL, DM, JRMIII, RWS, MKS), California Pacific Medical Center Research Institute, San Francisco, CA (AAD, MN, VB, DdS, ST, VS, ST, SPLL, DM, LS, RD, JRMIII, RWS, MKS); Department of Urology, Veterans Affairs Medical Center and University of California San Francisco, San Francisco, CA (SM); Life Technologies, Inc. Carlsbad, CA (PRB).
Vera SunCenter for Melanoma Research and Treatment (AAD, MN, VB, DdS, ST, VS, ST, SPLL, DM, JRMIII, RWS, MKS), California Pacific Medical Center Research Institute, San Francisco, CA (AAD, MN, VB, DdS, ST, VS, ST, SPLL, DM, LS, RD, JRMIII, RWS, MKS); Department of Urology, Veterans Affairs Medical Center and University of California San Francisco, San Francisco, CA (SM); Life Technologies, Inc. Carlsbad, CA (PRB).
Schuyler TongCenter for Melanoma Research and Treatment (AAD, MN, VB, DdS, ST, VS, ST, SPLL, DM, JRMIII, RWS, MKS), California Pacific Medical Center Research Institute, San Francisco, CA (AAD, MN, VB, DdS, ST, VS, ST, SPLL, DM, LS, RD, JRMIII, RWS, MKS); Department of Urology, Veterans Affairs Medical Center and University of California San Francisco, San Francisco, CA (SM); Life Technologies, Inc. Carlsbad, CA (PRB).
Stanley P L LeongCenter for Melanoma Research and Treatment (AAD, MN, VB, DdS, ST, VS, ST, SPLL, DM, JRMIII, RWS, MKS), California Pacific Medical Center Research Institute, San Francisco, CA (AAD, MN, VB, DdS, ST, VS, ST, SPLL, DM, LS, RD, JRMIII, RWS, MKS); Department of Urology, Veterans Affairs Medical Center and University of California San Francisco, San Francisco, CA (SM); Life Technologies, Inc. Carlsbad, CA (PRB).
David MinorCenter for Melanoma Research and Treatment (AAD, MN, VB, DdS, ST, VS, ST, SPLL, DM, JRMIII, RWS, MKS), California Pacific Medical Center Research Institute, San Francisco, CA (AAD, MN, VB, DdS, ST, VS, ST, SPLL, DM, LS, RD, JRMIII, RWS, MKS); Department of Urology, Veterans Affairs Medical Center and University of California San Francisco, San Francisco, CA (SM); Life Technologies, Inc. Carlsbad, CA (PRB).
Paul R BillingsCenter for Melanoma Research and Treatment (AAD, MN, VB, DdS, ST, VS, ST, SPLL, DM, JRMIII, RWS, MKS), California Pacific Medical Center Research Institute, San Francisco, CA (AAD, MN, VB, DdS, ST, VS, ST, SPLL, DM, LS, RD, JRMIII, RWS, MKS); Department of Urology, Veterans Affairs Medical Center and University of California San Francisco, San Francisco, CA (SM); Life Technologies, Inc. Carlsbad, CA (PRB).
Liliana SoroceanuCenter for Melanoma Research and Treatment (AAD, MN, VB, DdS, ST, VS, ST, SPLL, DM, JRMIII, RWS, MKS), California Pacific Medical Center Research Institute, San Francisco, CA (AAD, MN, VB, DdS, ST, VS, ST, SPLL, DM, LS, RD, JRMIII, RWS, MKS); Department of Urology, Veterans Affairs Medical Center and University of California San Francisco, San Francisco, CA (SM); Life Technologies, Inc. Carlsbad, CA (PRB).
Robert DebsCenter for Melanoma Research and Treatment (AAD, MN, VB, DdS, ST, VS, ST, SPLL, DM, JRMIII, RWS, MKS), California Pacific Medical Center Research Institute, San Francisco, CA (AAD, MN, VB, DdS, ST, VS, ST, SPLL, DM, LS, RD, JRMIII, RWS, MKS); Department of Urology, Veterans Affairs Medical Center and University of California San Francisco, San Francisco, CA (SM); Life Technologies, Inc. Carlsbad, CA (PRB).
James R MillerCenter for Melanoma Research and Treatment (AAD, MN, VB, DdS, ST, VS, ST, SPLL, DM, JRMIII, RWS, MKS), California Pacific Medical Center Research Institute, San Francisco, CA (AAD, MN, VB, DdS, ST, VS, ST, SPLL, DM, LS, RD, JRMIII, RWS, MKS); Department of Urology, Veterans Affairs Medical Center and University of California San Francisco, San Francisco, CA (SM); Life Technologies, Inc. Carlsbad, CA (PRB).
Richard W SagebielCenter for Melanoma Research and Treatment (AAD, MN, VB, DdS, ST, VS, ST, SPLL, DM, JRMIII, RWS, MKS), California Pacific Medical Center Research Institute, San Francisco, CA (AAD, MN, VB, DdS, ST, VS, ST, SPLL, DM, LS, RD, JRMIII, RWS, MKS); Department of Urology, Veterans Affairs Medical Center and University of California San Francisco, San Francisco, CA (SM); Life Technologies, Inc. Carlsbad, CA (PRB).
Mohammed Kashani-SabetCenter for Melanoma Research and Treatment (AAD, MN, VB, DdS, ST, VS, ST, SPLL, DM, JRMIII, RWS, MKS), California Pacific Medical Center Research Institute, San Francisco, CA (AAD, MN, VB, DdS, ST, VS, ST, SPLL, DM, LS, RD, JRMIII, RWS, MKS); Department of Urology, Veterans Affairs Medical Center and University of California San Francisco, San Francisco, CA (SM); Life Technologies, Inc. Carlsbad, CA (PRB). kashani@cpmcri.org.
San Francisco VA Medical Center · USCalifornia Pacific Medical Center · USUniversity of California, San Francisco · US

Funding

Validation of Genomic Targets in MelanomaR01CA114337 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KASHANI-SABET, MOHAMMED · 2005 to 2015
$3.2M
PHIP as a Biomarker of Triple-Negative MelanomaR01CA175768 · NCI · CALIFORNIA PACIFIC MED CTR RES INSTITUTE · PI KASHANI-SABET, MOHAMMED · 2014 to 2017
$1.7M
Molecular Classification of Primary Cutaneous MelanomaR01CA122947 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KASHANI-SABET, MOHAMMED · 2007 to 2011
$1.5M
NCI NIH HHS CA114337NCI NIH HHS CA122947NCI NIH HHS R01 CA114337NCI NIH HHS R01 CA175768
6 · The paper itself

Abstract

backgroundBromodomain PHD finger transcription factor (BPTF) plays an important role in chromatin remodeling, but its functional role in tumor progression is incompletely understood. Here we explore the oncogenic effects of BPTF in melanoma.

methodsThe consequences of differential expression of BPTF were explored using shRNA-mediated knockdown in several melanoma cell lines. Immunoblotting was used to assess the expression of various proteins regulated by BPTF. The functional role of BPTF in melanoma progression was investigated using assays of colony formation, invasion, cell cycle, sensitivity to selective BRAF inhibitors, and in xenograft models of melanoma progression (n = 12 mice per group). The biomarker role of BPTF in melanoma progression was assessed using fluorescence in situ hybridization and immunohistochemical analyses. All statistical tests were two-sided.

resultsshRNA-mediated BPTF silencing suppressed the proliferative capacity (by 65.5%) and metastatic potential (by 66.4%) of melanoma cells. Elevated BPTF copy number (mean ≥ 3) was observed in 28 of 77 (36.4%) melanomas. BPTF overexpression predicted poor survival in a cohort of 311 melanoma patients (distant metastasis-free survival P = .03, and disease-specific survival P = .008), and promoted resistance to BRAF inhibitors in melanoma cell lines. Metastatic melanoma tumors progressing on BRAF inhibitors contained low BPTF-expressing, apoptotic tumor cell subclones, indicating the continued presence of drug-responsive subclones within tumors demonstrating overall resistance to anti-BRAF agents.

conclusionsThese studies demonstrate multiple protumorigenic functions for BPTF and identify it as a novel target for anticancer therapy. They also suggest the combination of BPTF targeting with BRAF inhibitors as a novel therapeutic strategy for melanomas with mutant BRAF.

Indexed as

Molecular Targeted TherapyAnimalsAntigens, NuclearAntineoplastic AgentsBiomarkers, TumorBromodomain Containing ProteinsDisease ProgressionFemaleGene DosageGene Expression Regulation, NeoplasticImidazolesImmunoblottingImmunohistochemistryIndolesIn Situ Hybridization, FluorescenceMelanomaAntigens, NuclearAntineoplastic AgentsBiomarkers, TumorBraf protein, mouseBromodomain Containing Proteinsdabrafenibfetal Alzheimer antigenImidazolesIndolesNerve Tissue ProteinsOximesProto-Oncogene Proteins B-rafSulfonamidesTranscription FactorsVemurafenib

Identifiers

PMID25713167
PMCPMC4555639
OpenAlexW2106940478

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LicenceCC BY-NC
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.