Evidence map›Paper›PMID 25713135›Full record

ArticleThe Journal of biological chemistry2015

Transport rates of a glutamate transporter homologue are influenced by the lipid bilayer.

Benjamin C McIlwain, Robert J Vandenberg, Renae M Ryan

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 36 citations in OpenAlex.

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  7. How bilayer properties influence membrane protein folding.Protein science : a publication of the Protein Society · 2020
    Review
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  10. Elevator-type mechanisms of membrane transport.Biochemical Society transactions · 2020
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  18. Dynamic membrane protein topological switching upon changes in phospholipid environment.Proceedings of the National Academy of Sciences of the United States of America · 2015
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Benjamin C McIlwainFrom the Transporter Biology Group, Discipline of Pharmacology and Bosch Institute, University of Sydney, Sydney, New South Wales 2006, Australia.
Robert J VandenbergFrom the Transporter Biology Group, Discipline of Pharmacology and Bosch Institute, University of Sydney, Sydney, New South Wales 2006, Australia.
Renae M RyanFrom the Transporter Biology Group, Discipline of Pharmacology and Bosch Institute, University of Sydney, Sydney, New South Wales 2006, Australia renae.ryan@sydney.edu.au.
Robert Bosch (Australia) · AUThe University of Sydney · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The aspartate transporter from Pyrococcus horikoshii (GltPh) is a model for the structure of the SLC1 family of amino acid transporters. Crystal structures of GltPh provide insight into mechanisms of ion coupling and substrate transport; however, structures have been solved in the absence of a lipid bilayer so they provide limited information regarding interactions that occur between the protein and lipids of the membrane. Here, we investigated the effect of the lipid environment on aspartate transport by reconstituting GltPh into liposomes of defined lipid composition where the primary lipid is phosphatidylethanolamine (PE) or its methyl derivatives. We showed that the rate of aspartate transport and the transmembrane orientation of GltPh were influenced by the primary lipid in the liposomes. In PE liposomes, we observed the highest transport rate and showed that 85% of the transporters were orientated right-side out, whereas in trimethyl PE liposomes, 50% of transporters were right-side out, and we observed a 4-fold reduction in transport rate. Differences in orientation can only partially explain the lipid composition effect on transport rate. Crystal structures of GltPh revealed a tyrosine residue (Tyr-33) that we propose interacts with lipid headgroups during the transport cycle. Based on site-directed mutagenesis, we propose that a cation-π interaction between Tyr-33 and the lipid headgroups can influence conformational flexibility of the trimerization domain and thus the rate of transport. These results provide a specific example of how interactions between membrane lipids and membrane-bound proteins can influence function and highlight the importance of the role of the membrane in transporter function.

Indexed as

Amino Acid Transport System X-AGArchaeal ProteinsAspartic AcidBiological TransportCrystallography, X-RayKineticsLipid BilayersLiposomesModels, MolecularMutationPhosphatidylethanolaminesProtein BindingProtein Structure, TertiaryPyrococcus horikoshiiTyrosineAmino Acid Transport System X-AGArchaeal ProteinsAspartic AcidLipid BilayersLiposomesphosphatidylethanolaminePhosphatidylethanolaminesTyrosineAmino Acid TransportCation-πEAATGltPhGlutamateLipid BilayerMembrane ProteinMembrane Transporter Reconstitution

Identifiers

PMID25713135
PMCPMC4392276
OpenAlexW2035500992

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.