Evidence map›Paper›PMID 25713082›Full record

ArticleThe Journal of biological chemistry2015

Transcriptional activity of the islet β cell factor Pdx1 is augmented by lysine methylation catalyzed by the methyltransferase Set7/9.

Aarthi V Maganti, Bernhard Maier, Sarah A Tersey, Megan L Sampley, Amber L Mosley, Sabire Özcan, Boobalan Pachaiyappan, Patrick M Woster, Chad S Hunter, Roland Stein and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed, 1 pooled it
5.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 1 synthesis or guideline pooled it, 45 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Lysine and arginine methylation of transcription factors.Cellular and molecular life sciences : CMLS · 2024
    Review
  4. Review
  5. Review
  6. Review
  7. Article
  8. Review
  9. Methyltransferase Set7/9 as a Multifaceted Regulator of ROS Response.International journal of biological sciences · 2023
    Review
  10. Article
  11. The Ldb1 transcriptional co-regulator is required for establishment and maintenance of the pancreatic endocrine lineage.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2022
    Article
  12. Review
  13. Article
  14. Article
  15. Epigenetic Regulation of PDX-1 in Type 2 Diabetes Mellitus.Diabetes, metabolic syndrome and obesity : targets and therapy · 2021
    Review
  16. Review
  17. Epigenetics in β-cell adaptation and type 2 diabetes.Current opinion in pharmacology · 2020
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Aarthi V MagantiFrom the Department of Cellular and Integrative Physiology.
Bernhard MaierDepartment of Pediatrics and the Herman B. Wells Center for Pediatric Research.
Sarah A TerseyDepartment of Pediatrics and the Herman B. Wells Center for Pediatric Research.
Megan L Sampleythe Department of Molecular and Cellular Biochemistry, University of Kentucky College of Medicine, Lexington, Kentucky 40536.
Amber L MosleyDepartment of Biochemistry and Molecular Biology, and.
Sabire Özcanthe Department of Molecular and Cellular Biochemistry, University of Kentucky College of Medicine, Lexington, Kentucky 40536.
Boobalan Pachaiyappanthe Department of Drug Discovery and Biomedical Sciences, Medical University of South Carolina, Charleston, South Carolina 29425, and.
Patrick M Wosterthe Department of Drug Discovery and Biomedical Sciences, Medical University of South Carolina, Charleston, South Carolina 29425, and.
Chad S Hunterthe Department of Molecular Physiology and Biophysics, Vanderbilt University School of Medicine, Nashville, Tennessee 37232.
Roland Steinthe Department of Molecular Physiology and Biophysics, Vanderbilt University School of Medicine, Nashville, Tennessee 37232.
Raghavendra G MirmiraFrom the Department of Cellular and Integrative Physiology, Department of Pediatrics and the Herman B. Wells Center for Pediatric Research, Department of Biochemistry and Molecular Biology, and Department of Medicine, Indiana University School of Medicine, Indianapolis, Indiana 46202, rmirmira@iu.edu.
Medical University of South Carolina · USUniversity of Kentucky · USVanderbilt University · USIndiana University School of Medicine

Funding

Translation CoreP30DK097512 · NIDDK · INDIANA UNIVERSITY INDIANAPOLIS · PI Carmella Evans-Molina · 2015 to 2026
$17.4M
Transcriptional Mechanisms Governing Beta Cell DifferentiationR01DK060581 · NIDDK · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI Raghavendra G Mirmira · 2002 to 2026
$8.5M
PDX-1,A TRANSCRIPTIONAL ACTIVATOR OF THE INSULIN GENER01DK050203 · NIDDK · VANDERBILT UNIVERSITY · PI BASS, JOSEPH, STEIN, ROLAND W · 1995 to 2020
$6.8M
Identification of LSD1 inhibitors targeting epigenetic regulation in tumor cellsR01CA149095 · NCI · WAYNE STATE UNIVERSITY · PI WOSTER, PATRICK M · 2010 to 2014
$1.3M
Chromatin Cofactors in Islet Development and FunctionR01DK083583 · NIDDK · INDIANA UNIVERSITY INDIANAPOLIS · PI MIRMIRA, RAGHAVENDRA G · 2010 to 2013
$1.2M
Control of islet b-specific pdx-1 &mafA transcriptionR56DK050203 · NIDDK · VANDERBILT UNIVERSITY · PI STEIN, ROLAND W · 2005 to 2005
$76k
NCI NIH HHS R01 CA149095NIDDK NIH HHS P30 DK097512NIDDK NIH HHS R01 DK050203NIDDK NIH HHS R01 DK060581NIDDK NIH HHS R01 DK083583NIDDK NIH HHS R56 DK050203
6 · The paper itself

Abstract

The transcription factor Pdx1 is crucial to islet β cell function and regulates target genes in part through interaction with coregulatory factors. Set7/9 is a Lys methyltransferase that interacts with Pdx1. Here we tested the hypothesis that Lys methylation of Pdx1 by Set7/9 augments Pdx1 transcriptional activity. Using mass spectrometry and mutational analysis of purified proteins, we found that Set7/9 methylates the N-terminal residues Lys-123 and Lys-131 of Pdx1. Methylation of these residues occurred only in the context of intact, full-length Pdx1, suggesting a specific requirement of secondary and/or tertiary structural elements for catalysis by Set7/9. Immunoprecipitation assays and mass spectrometric analysis using β cells verified Lys methylation of endogenous Pdx1. Cell-based luciferase reporter assays using wild-type and mutant transgenes revealed a requirement of Pdx1 residue Lys-131, but not Lys-123, for transcriptional augmentation by Set7/9. Lys-131 was not required for high-affinity interactions with DNA in vitro, suggesting that its methylation likely enhances post-DNA binding events. To define the role of Set7/9 in β cell function, we generated mutant mice in which the gene encoding Set7/9 was conditionally deleted in β cells (Set(Δ)β). Set(Δ)β mice exhibited glucose intolerance similar to Pdx1-deficient mice, and their isolated islets showed impaired glucose-stimulated insulin secretion with reductions in expression of Pdx1 target genes. Our results suggest a previously unappreciated role for Set7/9-mediated methylation in the maintenance of Pdx1 activity and β cell function.

Indexed as

Amino Acid SequenceAnimalsCell Line, TumorHEK293 CellsHistone-Lysine N-MethyltransferaseHomeodomain ProteinsHumansImmunoblottingInsulin-Secreting CellsLysineMethylationMiceMice, Inbred C57BLMice, KnockoutMolecular Sequence DataNIH 3T3 CellsHistone-Lysine N-MethyltransferaseHomeodomain ProteinsLysinepancreatic and duodenal homeobox 1 proteinTrans-ActivatorsDiabetesGene Knockoutpancreatic IsletPdx1Protein MethylationSet7/9Transcription

Identifiers

PMID25713082
PMCPMC4392279
OpenAlexW2058272773

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.