Evidence map›Paper›PMID 25712196›Full record

ArticleThe Journal of pathology2015

Germline deletions in the tumour suppressor gene FOCAD are associated with polyposis and colorectal cancer development.

Robbert D A Weren, Ramprasath Venkatachalam, Jean-Baptiste Cazier, Henner F Farin, C Marleen Kets, Richarda M de Voer, Lilian Vreede, Eugène T P Verwiel, Monique van Asseldonk, Eveline J Kamping and 13 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of pathology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.8field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 33 citations in OpenAlex.

  1. Review
  2. Article
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  7. 9p21.3 Microdeletion involvingCold Spring Harbor molecular case studies · 2022
    Review
  8. Frontiers in genetics · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 6 institutions in 4 countries.

Robbert D A WerenDepartment of Human Genetics, Radboud university medical center, Nijmegen, The Netherlands.
Ramprasath VenkatachalamDepartment of Human Genetics, Radboud university medical center, Nijmegen, The Netherlands.
Jean-Baptiste CazierWellcome Trust Centre for Human Genetics University of Oxford, UK.
Henner F FarinHubrecht Institute, University Medical Centre Utrecht, The Netherlands.
C Marleen KetsDepartment of Human Genetics, Radboud university medical center, Nijmegen, The Netherlands.
Richarda M de VoerDepartment of Human Genetics, Radboud university medical center, Nijmegen, The Netherlands.
Lilian VreedeDepartment of Human Genetics, Radboud university medical center, Nijmegen, The Netherlands.
Eugène T P VerwielDepartment of Human Genetics, Radboud university medical center, Nijmegen, The Netherlands.
Monique van AsseldonkDepartment of Pathology, Radboud university medical center, Nijmegen, The Netherlands.
Eveline J KampingDepartment of Human Genetics, Radboud university medical center, Nijmegen, The Netherlands.
Lambertus A KiemeneyRadboud Institute for Health Sciences, Radboud university medical center, Nijmegen, The Netherlands.
Kornelia NevelingDepartment of Human Genetics, Radboud university medical center, Nijmegen, The Netherlands.
Katja K H AbenRadboud Institute for Health Sciences, Radboud university medical center, Nijmegen, The Netherlands.
Luis Carvajal-CarmonaGenome Center and Department of Biochemistry and Molecular Medicine, School of Medicine, University of California at Davis, CA, USA.
Iris D NagtegaalDepartment of Pathology, Radboud university medical center, Nijmegen, The Netherlands.
Hans K SchackertDepartment of Surgical Research, Universitätsklinikum Carl Gustav Carus, Technische Universität Dresden, Germany.
Hans CleversHubrecht Institute, University Medical Centre Utrecht, The Netherlands.
Marc van de WeteringHubrecht Institute, University Medical Centre Utrecht, The Netherlands.
Ian P TomlinsonWellcome Trust Centre for Human Genetics University of Oxford, UK.
Marjolijn J L LigtenbergDepartment of Human Genetics, Radboud university medical center, Nijmegen, The Netherlands.
Nicoline HoogerbruggeDepartment of Human Genetics, Radboud university medical center, Nijmegen, The Netherlands.
Ad Geurts van KesselDepartment of Human Genetics, Radboud university medical center, Nijmegen, The Netherlands.
Roland P KuiperDepartment of Human Genetics, Radboud university medical center, Nijmegen, The Netherlands.
Radboud University Medical Center · NLRadboud University Nijmegen · NLHubrecht Institute for Developmental Biology and Stem Cell Research · NLUniversity of Oxford · GBTU Dresden · DEUniversity of California, Davis · US

Funding

Cancer Research UK 16459
6 · The paper itself

Abstract

Heritable genetic variants can significantly affect the lifetime risk of developing cancer, including polyposis and colorectal cancer (CRC). Variants in genes currently known to be associated with a high risk for polyposis or CRC, however, explain only a limited number of hereditary cases. The identification of additional genetic causes is, therefore, crucial to improve CRC prevention, detection and treatment. We have performed genome-wide and targeted DNA copy number profiling and resequencing in early-onset and familial polyposis/CRC patients, and show that deletions affecting the open reading frame of the tumour suppressor gene FOCAD are recurrent and significantly enriched in CRC patients compared with unaffected controls. All patients carrying FOCAD deletions exhibited a personal or family history of polyposis. RNA in situ hybridization revealed FOCAD expression in epithelial cells in the colonic crypt, the site of tumour initiation, as well as in colonic tumours and organoids. Our data suggest that monoallelic germline deletions in the tumour suppressor gene FOCAD underlie moderate genetic predisposition to the development of polyposis and CRC.

Indexed as

Gene DeletionAdenomatous Polyposis ColiAdultCase-Control StudiesChromosomes, Human, Pair 9Colorectal NeoplasmsDNA Copy Number VariationsEpithelial CellsFemaleGene Expression Regulation, NeoplasticGerm-Line MutationHeterozygoteHumansMaleMiddle AgedNeoplasm Recurrence, LocalFOCAD protein, humanTumor Suppressor Proteinscancer predispositioncopy number variationFOCADgene expressionpolyposis and colorectal cancer

Identifiers

PMID25712196
PMCPMC6681464
OpenAlexW1584035688

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.