Evidence map›Paper›PMID 25712101›Full record

ArticleNucleic acids research2015

Gene-specific cell labeling using MiMIC transposons.

Joshua P Gnerer, Koen J T Venken, Herman A Dierick

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 92 citations in OpenAlex.

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  8. Constitutive and Conditional Epitope Tagging of Endogenous G-Protein-Coupled Receptors inThe Journal of neuroscience : the official journal of the Society for Neuroscience · 2024
    Article
  9. Hox gene-specific cellular targeting using split intein Trojan exons.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  10. Article
  11. Expanding theeLife · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Joshua P GnererDepartment of Molecular & Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Koen J T VenkenVerna and Marrs McLean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, TX 77030, USA Department of Pharmacology, Baylor College of Medicine, Houston, TX 77030, USA Dan L. Ducan Cancer Center, Baylor College of Medicine, Houston, TX 77030, USA Program in Integrative and Molecular Biomedical Sciences, Baylor College of Medicine, Houston, TX 77030, USA Department of Neuroscience, Baylor College of Medicine, Houston, TX 77030, USA Dierick@bcm.edu.
Herman A DierickDepartment of Molecular & Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA Program in Developmental Biology, Baylor College of Medicine, Houston, TX 77030, USA Department of Pathology and Immunology, Baylor College of Medicine, Houston, TX 77030, USA Department of Neuroscience, Baylor College of Medicine, Houston, TX 77030, USA Dierick@bcm.edu.
Baylor College of Medicine · US

Funding

Serotonergic modulation of aggression in Drosophila melanogasterR01GM109938 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI DIERICK, HERMAN A · 2015 to 2019
$1.5M
The Drosophila Gene Tagging Project: Transgenes with Swappable Protein TagsR21HG006726 · NHGRI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI HOSKINS, ROGER ALLEN · 2012 to 2013
$486k
Using cell and fly models to understand gene function in undiagnosed diseasesR21GM110190 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI GRAHAM, BRETT HARRISON · 2014 to 2015
$470k
NHGRI NIH HHS 1R21HG006726NHGRI NIH HHS R21 HG006726NIGMS NIH HHS 1R01GM109938NIGMS NIH HHS 1R21GM110190NIGMS NIH HHS R01 GM109938
6 · The paper itself

Abstract

Binary expression systems such as GAL4/UAS, LexA/LexAop and QF/QUAS have greatly enhanced the power of Drosophila as a model organism by allowing spatio-temporal manipulation of gene function as well as cell and neural circuit function. Tissue-specific expression of these heterologous transcription factors relies on random transposon integration near enhancers or promoters that drive the binary transcription factor embedded in the transposon. Alternatively, gene-specific promoter elements are directly fused to the binary factor within the transposon followed by random or site-specific integration. However, such insertions do not consistently recapitulate endogenous expression. We used Minos-Mediated Integration Cassette (MiMIC) transposons to convert host loci into reliable gene-specific binary effectors. MiMIC transposons allow recombinase-mediated cassette exchange to modify the transposon content. We developed novel exchange cassettes to convert coding intronic MiMIC insertions into gene-specific binary factor protein-traps. In addition, we expanded the set of binary factor exchange cassettes available for non-coding intronic MiMIC insertions. We show that binary factor conversions of different insertions in the same locus have indistinguishable expression patterns, suggesting that they reliably reflect endogenous gene expression. We show the efficacy and broad applicability of these new tools by dissecting the cellular expression patterns of the Drosophila serotonin receptor gene family.

Indexed as

DNA Transposable ElementsGene ExpressionAnimalsBacterial ProteinsDrosophilaDrosophila ProteinsGreen Fluorescent ProteinsLexA Repressor ProteinMushroom BodiesPeptidesReceptor, Serotonin, 5-HT1AReceptor, Serotonin, 5-HT1BRecombinasesRepressor ProteinsSerine EndopeptidasesTranscription FactorsBacterial ProteinsDNA Transposable ElementsDrosophila ProteinsGreen Fluorescent ProteinsLexA Repressor ProteinPeptidesReceptor, Serotonin, 5-HT1AReceptor, Serotonin, 5-HT1BRecombinasesRepressor ProteinsSerine EndopeptidasesTranscription Factors

Identifiers

PMID25712101
PMCPMC4417149
OpenAlexW2080671137

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.