Evidence map›Paper›PMID 25712084›Full record

ArticleEuropean journal of human genetics : EJHG2015

Next generation sequencing in sporadic retinoblastoma patients reveals somatic mosaicism.

Sara Amitrano, Annabella Marozza, Serena Somma, Valentina Imperatore, Theodora Hadjistilianou, Sonia De Francesco, Paolo Toti, Daniela Galimberti, Ilaria Meloni, Francesco Cetta and 9 more

Open access · bronzeAbstract read
In one paragraph

Article in European journal of human genetics : EJHG, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
3.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 46 citations in OpenAlex.

  1. Review
  2. Review
  3. Mutational analysis of theFrontiers in medicine · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Review
  13. Spectrum ofFrontiers in genetics · 2020
    Article
  14. TheGenes · 2019
    Review
  15. Review
  16. Article
  17. Article
  18. Spectrum of germlineMolecular vision · 2018
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 4 institutions in 1 country.

Sara AmitranoMedical Genetics, Department of Medical Biotechnologies, University of Siena, Policlinico 'Santa Maria alle Scotte', Siena, Italy.
Annabella MarozzaMedical Genetics, Azienda Ospedaliera Universitaria Senese, Siena, Italy.
Serena SommaMedical Genetics, Department of Medical Biotechnologies, University of Siena, Policlinico 'Santa Maria alle Scotte', Siena, Italy.
Valentina ImperatoreMedical Genetics, Department of Medical Biotechnologies, University of Siena, Policlinico 'Santa Maria alle Scotte', Siena, Italy.
Theodora HadjistilianouUnit of Ophthalmology, Retinoblastoma Referral Center, Department of Surgery, University of Siena, Policlinico 'Santa Maria alle Scotte', Siena, Italy.
Sonia De FrancescoUnit of Ophthalmology, Retinoblastoma Referral Center, Department of Surgery, University of Siena, Policlinico 'Santa Maria alle Scotte', Siena, Italy.
Paolo TotiPathology, Department of Medical Biotechnologies, University of Siena, Policlinico 'Santa Maria alle Scotte', Siena, Italy.
Daniela GalimbertiUnit of Pediatrics, Department of Maternal, Newborn and Child Health, Azienda Ospedaliera Universitaria Senese, Policlinico 'Santa Maria alle Scotte', Siena, Italy.
Ilaria MeloniMedical Genetics, Department of Medical Biotechnologies, University of Siena, Policlinico 'Santa Maria alle Scotte', Siena, Italy.
Francesco CettaIRCCS MultiMedica, Milan, Italy.
Pietro PiuDepartment of Medicine, Surgery and Neuroscience, University of Siena, Siena, Italy.
Chiara Di MarcoMedical Genetics, Department of Medical Biotechnologies, University of Siena, Policlinico 'Santa Maria alle Scotte', Siena, Italy.
Laura DosaMedical Genetics, Department of Medical Biotechnologies, University of Siena, Policlinico 'Santa Maria alle Scotte', Siena, Italy.
Caterina Lo RizzoMedical Genetics, Department of Medical Biotechnologies, University of Siena, Policlinico 'Santa Maria alle Scotte', Siena, Italy.
Giulia CarignaniMedical Genetics, Department of Medical Biotechnologies, University of Siena, Policlinico 'Santa Maria alle Scotte', Siena, Italy.
Maria Antonietta MencarelliMedical Genetics, Department of Medical Biotechnologies, University of Siena, Policlinico 'Santa Maria alle Scotte', Siena, Italy.
Francesca MariMedical Genetics, Department of Medical Biotechnologies, University of Siena, Policlinico 'Santa Maria alle Scotte', Siena, Italy.
Alessandra RenieriMedical Genetics, Department of Medical Biotechnologies, University of Siena, Policlinico 'Santa Maria alle Scotte', Siena, Italy.
Francesca ArianiMedical Genetics, Department of Medical Biotechnologies, University of Siena, Policlinico 'Santa Maria alle Scotte', Siena, Italy.
Azienda Ospedaliera Universitaria Senese · ITUniversity of Siena · ITOspedale Santa Maria alle Scotte · ITMultiMedica · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In about 50% of sporadic cases of retinoblastoma, no constitutive RB1 mutations are detected by conventional methods. However, recent research suggests that, at least in some of these cases, there is somatic mosaicism with respect to RB1 normal and mutant alleles. The increased availability of next generation sequencing improves our ability to detect the exact percentage of patients with mosaicism. Using this technology, we re-tested a series of 40 patients with sporadic retinoblastoma: 10 of them had been previously classified as constitutional heterozygotes, whereas in 30 no RB1 mutations had been found in lymphocytes. In 3 of these 30 patients, we have now identified low-level mosaic variants, varying in frequency between 8 and 24%. In 7 out of the 10 cases previously classified as heterozygous from testing blood cells, we were able to test additional tissues (ocular tissues, urine and/or oral mucosa): in three of them, next generation sequencing has revealed mosaicism. Present results thus confirm that a significant fraction (6/40; 15%) of sporadic retinoblastoma cases are due to postzygotic events and that deep sequencing is an efficient method to unambiguously distinguish mosaics. Re-testing of retinoblastoma patients through next generation sequencing can thus provide new information that may have important implications with respect to genetic counseling and family care.

Indexed as

High-Throughput Nucleotide SequencingMosaicismAdolescentAdultAllelesChildChild, PreschoolFemaleGerm-Line MutationHeterozygoteHumansMaleRetinoblastomaRetinoblastoma ProteinRetinoblastoma Protein

Identifiers

PMID25712084
PMCPMC4613478
OpenAlexW2064956622

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.