Evidence map›Paper›PMID 25710912›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2015

Repression of Ccr9 transcription in mouse T lymphocyte progenitors by the Notch signaling pathway.

Veena Krishnamoorthy, Tiffany Carr, Renee F de Pooter, Akinola Olumide Emanuelle, Emanuelle Olumide Akinola, Fotini Gounari, Barbara L Kee

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 19 citations in OpenAlex.

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  11. Toll-Like Receptor 4 Promotes Th17 Lymphocyte Infiltration Via CCL25/CCR9 in Pathogenesis of Experimental Autoimmune Encephalomyelitis.Journal of neuroimmune pharmacology : the official journal of the Society on NeuroImmune Pharmacology · 2019
    Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Veena KrishnamoorthyCommittee on Molecular Pathogenesis and Molecular Medicine, The University of Chicago, Chicago, IL 60637;
Tiffany CarrCommittee on Immunology, The University of Chicago, Chicago, IL 60637;
Renee F de PooterCommittee on Immunology, The University of Chicago, Chicago, IL 60637;
Akinola Olumide Emanuelle
Emanuelle Olumide AkinolaCommittee on Immunology, The University of Chicago, Chicago, IL 60637;
Fotini GounariCommittee on Immunology, The University of Chicago, Chicago, IL 60637; Section of Rheumatology, Department of Medicine, The University of Chicago, Chicago, IL 60637; and.
Barbara L KeeCommittee on Molecular Pathogenesis and Molecular Medicine, The University of Chicago, Chicago, IL 60637; Committee on Immunology, The University of Chicago, Chicago, IL 60637; Department of Pathology, The University of Chicago, Chicago, IL 60637 bkee@bsd.uchicago.edu.
University of Chicago · USMolecular Biology Consortium · US

Funding

Re-Engineering Translational Research at the University of ChicagoUL1TR000430 · NCATS · UNIVERSITY OF CHICAGO · PI SOLWAY, JULIAN · 2012 to 2016
$20.2M
INTERDISCIPLINARY TRAINING PROGRAM IN IMMUNOLOGYT32AI007090 · NIAID · UNIVERSITY OF CHICAGO · PI Peter Aidan Savage · 1985 to 2026
$11.7M
Transcriptional Control of Natural Killer Cell DevelopmentR01AI106352 · NIAID · UNIVERSITY OF CHICAGO · PI KEE, BARBARA L. · 2014 to 2023
$4.6M
Regulation of Lymphocyte Development by HLH ProteinsR01CA099978 · NCI · UNIVERSITY OF CHICAGO · PI KEE, BARBARA L. · 2003 to 2012
$3.2M
Transcriptional Control of HematopoiesisR01AI078267 · NIAID · UNIVERSITY OF CHICAGO · PI KEE, BARBARA L. · 2009 to 2013
$1.9M
Mechanisms of Lymphocyte Gene Regulation by E2A and Notch1R01AI079213 · NIAID · UNIVERSITY OF CHICAGO · PI KEE, BARBARA L. · 2009 to 2010
$761k
NCATS NIH HHS UL1 TR000430NCI NIH HHS R01 CA099978NIAID NIH HHS AI106352NIAID NIH HHS R01 AI078267NIAID NIH HHS R01 AI079213NIAID NIH HHS R01 AI089213NIAID NIH HHS R01 AI106352NIAID NIH HHS T32 AI007090
6 · The paper itself

Abstract

The chemokine receptor CCR9 controls the immigration of multipotent hematopoietic progenitor cells into the thymus to sustain T cell development. Postimmigration, thymocytes downregulate CCR9 and migrate toward the subcapsular zone where they recombine their TCR β-chain and γ-chain gene loci. CCR9 is subsequently upregulated and participates in the localization of thymocytes during their selection for self-tolerant receptor specificities. Although the dynamic regulation of CCR9 is essential for early T cell development, the mechanisms controlling CCR9 expression have not been determined. In this article, we show that key regulators of T cell development, Notch1 and the E protein transcription factors E2A and HEB, coordinately control the expression of Ccr9. E2A and HEB bind at two putative enhancers upstream of Ccr9 and positively regulate CCR9 expression at multiple stages of T cell development. In contrast, the canonical Notch signaling pathway prevents the recruitment of p300 to the putative Ccr9 enhancers, resulting in decreased acetylation of histone H3 and a failure to recruit RNA polymerase II to the Ccr9 promoter. Although Notch signaling modestly modulates the binding of E proteins to one of the two Ccr9 enhancers, we found that Notch signaling represses Ccr9 in T cell lymphoma lines in which Ccr9 transcription is independent of E protein function. Our data support the hypothesis that activation of Notch1 has a dominant-negative effect on Ccr9 transcription and that Notch1 and E proteins control the dynamic expression of Ccr9 during T cell development.

Indexed as

Gene Expression RegulationReceptors, NotchSignal TransductionTranscription, GeneticAnimalsAntigens, SurfaceBinding SitesCell LineCell MovementEnhancer Elements, GeneticGene Expression Regulation, NeoplasticHumansImmunophenotypingLymphoid Progenitor CellsLymphomaMiceAntigens, SurfaceCC chemokine receptor 9p300-CBP Transcription FactorsReceptors, CCRReceptors, NotchRNA, MessengerTranscription Factors

Identifiers

PMID25710912
PMCPMC4369417
OpenAlexW2137463095

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.