Evidence map›Paper›PMID 25710793›Full record

ArticlePloS one2015

Analysis of the link between the redox state and enzymatic activity of the HtrA (DegP) protein from Escherichia coli.

Tomasz Koper, Agnieszka Polit, Anna Sobiecka-Szkatula, Katarzyna Wegrzyn, Andrea Scire, Donata Figaj, Leszek Kadzinski, Urszula Zarzecka, Dorota Zurawa-Janicka, Bogdan Banecki and 4 more

Abstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Tomasz KoperDepartment of Biochemistry, Faculty of Biology, University of Gdansk, Gdansk, Poland.
Agnieszka PolitDepartment of Physical Biochemistry, Faculty of Biochemistry, Biophysics, and Biotechnology, Jagiellonian University, Krakow, Poland.
Anna Sobiecka-SzkatulaDepartment of Biochemistry, Faculty of Biology, University of Gdansk, Gdansk, Poland.
Katarzyna WegrzynDepartment of Molecular and Cellular Biology, Intercollegiate Faculty of Biotechnology of the University of Gdansk and Medical University of Gdansk, Gdansk, Poland.
Andrea ScireDepartment of Life and Environmental Sciences, Universita Politecnica delle Marche, Ancona, Italy.
Donata FigajDepartment of Biochemistry, Faculty of Biology, University of Gdansk, Gdansk, Poland.
Leszek KadzinskiDepartment of Molecular and Cellular Biology, Intercollegiate Faculty of Biotechnology of the University of Gdansk and Medical University of Gdansk, Gdansk, Poland.
Urszula ZarzeckaDepartment of Biochemistry, Faculty of Biology, University of Gdansk, Gdansk, Poland.
Dorota Zurawa-JanickaDepartment of Biochemistry, Faculty of Biology, University of Gdansk, Gdansk, Poland.
Bogdan BaneckiDepartment of Molecular and Cellular Biology, Intercollegiate Faculty of Biotechnology of the University of Gdansk and Medical University of Gdansk, Gdansk, Poland.
Adam LesnerDepartment of Biochemistry, Faculty of Chemistry, University of Gdansk, Gdansk, Poland.
Fabio TanfaniDepartment of Life and Environmental Sciences, Universita Politecnica delle Marche, Ancona, Italy.
Barbara LipinskaDepartment of Biochemistry, Faculty of Biology, University of Gdansk, Gdansk, Poland.
Joanna Skorko-GlonekDepartment of Biochemistry, Faculty of Biology, University of Gdansk, Gdansk, Poland.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacterial HtrAs are proteases engaged in extracytoplasmic activities during stressful conditions and pathogenesis. A model prokaryotic HtrA (HtrA/DegP from Escherichia coli) requires activation to cleave its substrates efficiently. In the inactive state of the enzyme, one of the regulatory loops, termed LA, forms inhibitory contacts in the area of the active center. Reduction of the disulfide bond located in the middle of LA stimulates HtrA activity in vivo suggesting that this S-S bond may play a regulatory role, although the mechanism of this stimulation is not known. Here, we show that HtrA lacking an S-S bridge cleaved a model peptide substrate more efficiently and exhibited a higher affinity for a protein substrate. An LA loop lacking the disulfide was more exposed to the solvent; hence, at least some of the interactions involving this loop must have been disturbed. The protein without S-S bonds demonstrated lower thermal stability and was more easily converted to a dodecameric active oligomeric form. Thus, the lack of the disulfide within LA affected the stability and the overall structure of the HtrA molecule. In this study, we have also demonstrated that in vitro human thioredoxin 1 is able to reduce HtrA; thus, reduction of HtrA can be performed enzymatically.

Indexed as

Amino Acid SequenceCircular DichroismDisulfidesEscherichia coliHeat-Shock ProteinsHistidineKineticsMolecular Sequence DataMutagenesisOligopeptidesOxidation-ReductionPeriplasmic ProteinsProteolysisRecombinant Fusion ProteinsSequence AlignmentSerine EndopeptidasesDegP proteaseDisulfidesHeat-Shock ProteinsHis-His-His-His-His-HisHistidineOligopeptidesPeriplasmic ProteinsRecombinant Fusion ProteinsSerine Endopeptidases

Identifiers

PMID25710793
PMCPMC4339722

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.