Evidence map›Paper›PMID 25710372›Full record

ArticleApplied and environmental microbiology2015

A new fungal isolate, Penidiella sp. strain T9, accumulates the rare earth element dysprosium.

Takumi Horiike, Mitsuo Yamashita

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
10.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 67 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Biological leaching of rare earth elements.World journal of microbiology & biotechnology · 2020
    Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. Metal and metalloid biorecovery using fungi.Microbial biotechnology · 2017
    Article
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Takumi HoriikeRare Metal Bioresearch Center, Research Organization for Advanced Engineering, Shibaura Institute of Technology, Saitama-shi, Saitama, Japan.
Mitsuo YamashitaRare Metal Bioresearch Center, Research Organization for Advanced Engineering, Shibaura Institute of Technology, Saitama-shi, Saitama, Japan yamashi@sic.shibaura-it.ac.jp.
Shibaura Institute of Technology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

With an aim to develop a highly efficient method for the recovery of rare earth elements (REEs) by using microorganisms, we attempted to isolate dysprosium (Dy)-accumulating microorganisms that grow under acidic conditions from environmental samples containing high concentrations of heavy metals. One acidophilic strain, T9, which was isolated from an abandoned mine, decreased the concentration of Dy in medium that contained 100 mg/liter Dy to 53 mg/liter Dy after 3 days of cultivation at pH 2.5. The Dy content in the cell pellet of the T9 strain was 910 μg/mg of dry cells. The T9 strain also accumulated other REEs. Based on the results of 28S-D1/D2 rRNA gene sequencing and morphological characterization, we designated this fungal strain Penidiella sp. T9. Bioaccumulation of Dy was observed on the cell surface of the T9 strain by elemental mapping using scanning electron microscopy-energy dispersive X-ray spectroscopy. Our results indicate that Penidiella sp. T9 has the potential to recover REEs such as Dy from mine drainage and industrial liquid waste under acidic conditions.

Indexed as

Soil MicrobiologyAscomycotaCluster AnalysisCulture MediaDNA, FungalDNA, RibosomalDysprosiumHydrogen-Ion ConcentrationMicroscopy, Electron, ScanningMolecular Sequence DataPhylogenyRNA, Ribosomal, 28SSequence Analysis, DNASpectrometry, X-Ray EmissionCulture MediaDNA, FungalDNA, RibosomalDysprosiumRNA, Ribosomal, 28S

Identifiers

PMID25710372
PMCPMC4393457
OpenAlexW2064421620

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.