Evidence map›Paper›PMID 25707924›Full record

ArticleJournal of medical primatology2015

Analysis of full-length mitochondrial DNA D-loop sequences from Macaca fascicularis of different geographical origin reveals novel haplotypes.

Anjna Badhan, Christina A Eichstaedt, Neil M Almond, Leslie A Knapp, Nicola J Rose

Open access · bronzeAbstract read
In one paragraph

Article in Journal of medical primatology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Anjna BadhanDivision of Virology, National Institute for Biological Standards and Control, Medicines and Healthcare Products Regulatory Authority, South Mimms, Hertfordshire, UK.
Christina A EichstaedtDivision of Biological Anthropology, Department of Archaeology and Anthropology, University of Cambridge, Cambridge, UK.
Neil M AlmondDivision of Virology, National Institute for Biological Standards and Control, Medicines and Healthcare Products Regulatory Authority, South Mimms, Hertfordshire, UK.
Leslie A KnappDivision of Biological Anthropology, Department of Archaeology and Anthropology, University of Cambridge, Cambridge, UK.
Nicola J RoseDivision of Virology, National Institute for Biological Standards and Control, Medicines and Healthcare Products Regulatory Authority, South Mimms, Hertfordshire, UK.
National Institute for Biological Standards and Control · GBUniversity of Cambridge · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCynomolgus macaques are indigenous to Asia occupying a range of geographical areas. A non-indigenous population established on Mauritius approximately 500 years ago. Mauritian cynomolgus macaques are recognised as having low genetic diversity compared to Indonesian macaques, from which they originated. As cynomolgus macaques are widely used as a biomedical model, there have been many studies of their genetic relationships. However, population diversity and relationships have only been assessed through analysis of either the hypervariable region I or II separately within the D-loop region of the mitochondrial genome in these macaques.

methodsUsing sequencing, we defined haplotypes encompassing the full D-loop sequence for Mauritian and Indonesian cynomolgus macaques.

resultsWe evaluated the haplotype relationships by constructing a median-joining network based on full-length D-loop sequences, which has not been reported previously.

conclusionOur data allow a complete D-loop haplotype, including a hereto unreported polymorphic region, to be defined to aid the resolution of populations of cynomolgus macaques and which highlights the value in analysing both D-loop hypervariable regions in concert.

Indexed as

AnimalsBase SequenceDNA, MitochondrialGenetic VariationHaplotypesIndonesiaMacaca fascicularisMauritiusMolecular Sequence DataPhylogenyPolymerase Chain ReactionPolymorphism, GeneticSequence Analysis, DNADNA, Mitochondrialcontrol regioncynomolgus macaquediversityIndonesiaMauritiusmtDNA

Identifiers

PMID25707924
PMCPMC5024038
OpenAlexW2013996376

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.