Evidence map›Paper›PMID 25707804›Full record

SynthesisNature2015

An epigenome-wide association study of total serum immunoglobulin E concentration.

Liming Liang, Saffron A G Willis-Owen, Catherine Laprise, Kenny C C Wong, Gwyneth A Davies, Thomas J Hudson, Aristea Binia, Julian M Hopkin, Ivana V Yang, Elin Grundberg and 8 more

Open access · greenAbstract readMeta-Analysis
In one paragraph

Synthesis in Nature, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 113 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
113citing papers in PubMed, 4 pooled it
21.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

113 citing papers in PubMed, 4 syntheses or guidelines pooled it, 222 citations in OpenAlex.

  1. Pooled it
  2. Shared DNA methylation signatures in childhood allergy: The MeDALL study.The Journal of allergy and clinical immunology · 2021
    Pooled it
  3. Pooled it
  4. Pooled it
  5. A Multiomics Approach to Identify Genes Associated with Childhood Asthma Risk and Morbidity.American journal of respiratory cell and molecular biology · 2017
    Trial
  6. Article
  7. Article
  8. Association of Childhood Asthma with the Concept of Exposomics: A Short Review.Medical science monitor : international medical journal of experimental and clinical research · 2025
    Review
  9. Article
  10. Article
  11. Article
  12. Multifaceted roles of mitochondria in asthma.Cell biology and toxicology · 2024
    Review
  13. Review
  14. Article
  15. Review
  16. Article
  17. Review
  18. Epigenetic regulation of immune function in asthma.The Journal of allergy and clinical immunology · 2022
    Review
  19. Review
  20. Review

53 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 9 institutions in 4 countries.

Liming LiangDepartments of Epidemiology and Biostatistics, Harvard School of Public Health, Boston, MA 02115.
Saffron A G Willis-Owen *National Heart and Lung Institute, Imperial College, London SW3 6LY, UK.
Catherine Laprise *Université du Québec à Chicoutimi, Saguenay, Québec, Canada.
Kenny C C WongNational Heart and Lung Institute, Imperial College, London SW3 6LY, UK.
Gwyneth A DaviesInstitute of Life Science, College of Medicine, Swansea University, SA2 8PP, UK.
Thomas J HudsonOntario Institute for Cancer Research, Toronto, Ontario Canada, M5G 0A3.
Aristea BiniaNational Heart and Lung Institute, Imperial College, London SW3 6LY, UK.
Julian M HopkinInstitute of Life Science, College of Medicine, Swansea University, SA2 8PP, UK.
Ivana V YangUniversity of Colorado School of Medicine and National Jewish Health, Denver, CO 80206.
Elin GrundbergDepartment of Human Genetics, McGill University and Génome Québec Innovation Centre, Montréal, Canada.
Stephan BuscheDepartment of Human Genetics, McGill University and Génome Québec Innovation Centre, Montréal, Canada.
Marie HudsonJewish General Hospital and Lady Davis Research Institute, Montréal, Canada H3T 1E2.
Lars RönnblomDepartment of Medical Sciences, SciLifeLab, Uppsala University, Uppsala, Sweden.
Tomi M PastinenDepartment of Human Genetics, McGill University and Génome Québec Innovation Centre, Montréal, Canada.
David A SchwartzUniversity of Colorado School of Medicine and National Jewish Health, Denver, CO 80206.
G Mark LathropDepartment of Human Genetics, McGill University and Génome Québec Innovation Centre, Montréal, Canada.
Miriam F MoffattNational Heart and Lung Institute, Imperial College, London SW3 6LY, UK.
William O C M CooksonNational Heart and Lung Institute, Imperial College, London SW3 6LY, UK.
Imperial College London · GBMcGill University and Génome Québec Innovation Centre · CANational Jewish Health · USSwansea University · GBHarvard University · USJewish General Hospital · CAOntario Institute for Cancer Research · CAScience for Life Laboratory · SEUniversité du Québec à Chicoutimi · CA

Funding

Project 3: Environmental Determinants of Host DefenseP01ES018181 · NIEHS · NATIONAL JEWISH HEALTH · PI SCHWARTZ, DAVID ALBERT · 2009 to 2013
$5.7M
Asthma: An Epidemic Caused by Epigenetics?R01HL101251 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI COSGROVE, GREGORY P, SCHWARTZ, DAVID ALBERT · 2009 to 2013
$3.1M
Medical Research Council G1000758Medical Research Council MR/K006525/1NHLBI NIH HHS R01 HL101251NHLBI NIH HHS R01 HL101251-01NIEHS NIH HHS P01-ES18181Wellcome Trust 096964Wellcome Trust 097117Wellcome Trust WT 077959
6 · The paper itself

Abstract

Immunoglobulin E (IgE) is a central mediator of allergic (atopic) inflammation. Therapies directed against IgE can alleviate hay fever and allergic asthma. Genetic association studies have not yet identified novel therapeutic targets or pathways underlying IgE regulation. We therefore surveyed epigenetic associations between serum IgE concentrations and methylation at loci concentrated in CpG islands genome wide in 95 nuclear pedigrees, using DNA from peripheral blood leukocytes. We validated positive results in additional families and in subjects from the general population. Here we show replicated associations--with a meta-analysis false discovery rate less than 10(-4)--between IgE and low methylation at 36 loci. Genes annotated to these loci encode known eosinophil products, and also implicate phospholipid inflammatory mediators, specific transcription factors and mitochondrial proteins. We confirmed that methylation at these loci differed significantly in isolated eosinophils from subjects with and without asthma and high IgE levels. The top three loci accounted for 13% of IgE variation in the primary subject panel, explaining the tenfold higher variance found compared with that derived from large single-nucleotide polymorphism genome-wide association studies. This study identifies novel therapeutic targets and biomarkers for patient stratification for allergic diseases.

Indexed as

Genetic Association StudiesAdolescentAdultAsthmaChildCpG IslandsDNA MethylationEosinophilsEpigenesis, GeneticFemaleGenome, HumanHumansImmunoglobulin EInflammation MediatorsMaleMiddle AgedImmunoglobulin EInflammation MediatorsMitochondrial ProteinsTranscription Factors

Identifiers

PMID25707804
PMCPMC4416961
OpenAlexW2154532141

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.