Evidence map›Paper›PMID 25707007›Full record

ArticlePloS one2015

A transcriptome derived female-specific marker from the invasive Western mosquitofish (Gambusia affinis).

Dunja K Lamatsch, Sofia Adolfsson, Alistair M Senior, Guntram Christiansen, Maria Pichler, Yuichi Ozaki, Linnea Smeds, Manfred Schartl, Shinichi Nakagawa

Abstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
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  4. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Dunja K LamatschUniversity of Innsbruck, Research Institute for Limnology, Mondsee, Austria.
Sofia AdolfssonUppsala University, Department of Evolutionary Biology, Evolutionary Biology Centre, Uppsala, Sweden.
Alistair M SeniorUniversity of Otago, Department of Zoology, Dunedin, New Zealand; University of Sydney, Charles Perkins Centre / School of Biological Sciences, Sydney, New South Wales, Australia.
Guntram ChristiansenUniversity of Innsbruck, Research Institute for Limnology, Mondsee, Austria.
Maria PichlerUniversity of Innsbruck, Research Institute for Limnology, Mondsee, Austria.
Yuichi OzakiUniversity of Otago, Department of Zoology, Dunedin, New Zealand.
Linnea SmedsUppsala University, Department of Evolutionary Biology, Evolutionary Biology Centre, Uppsala, Sweden.
Manfred SchartlUniversity of Würzburg, Physiological Chemistry, Biocenter, Würzburg, Germany.
Shinichi NakagawaUniversity of Otago, Department of Zoology, Dunedin, New Zealand.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sex-specific markers are a prerequisite for understanding reproductive biology, genetic factors involved in sex differences, mechanisms of sex determination, and ultimately the evolution of sex chromosomes. The Western mosquitofish, Gambusia affinis, may be considered a model species for sex-chromosome evolution, as it displays female heterogamety (ZW/ZZ), and is also ecologically interesting as a worldwide invasive species. Here, de novo RNA-sequencing on the gonads of sexually mature G. affinis was used to identify contigs that were highly transcribed in females but not in males (i.e., transcripts with ovary-specific expression). Subsequently, 129 primer pairs spanning 79 contigs were tested by PCR to identify sex-specific transcripts. Of those primer pairs, one female-specific DNA marker was identified, Sanger sequenced and subsequently validated in 115 fish. Sequence analyses revealed a high similarity between the identified sex-specific marker and the 3´ UTR of the aminomethyl transferase (amt) gene of the closely related platyfish (Xiphophorus maculatus). This is the first time that RNA-seq has been used to successfully characterize a sex-specific marker in a fish species in the absence of a genome map. Additionally, the identified sex-specific marker represents one of only a handful of such markers in fishes.

Indexed as

AnimalsCyprinodontiformesDNA PrimersFemaleGenetic MarkersMalePhylogenySequence Analysis, RNASex ChromosomesSex Determination AnalysisSex Determination ProcessesTranscriptomeDNA PrimersGenetic Markers

Identifiers

PMID25707007
PMCPMC4338254

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.