Evidence map›Paper›PMID 25706748›Full record

ArticlePloS one2015

Expression and mutational analysis of DinB-like protein DR0053 in Deinococcus radiodurans.

Deepti Appukuttan, Ho Seong Seo, Sunwook Jeong, Sunghun Im, Minho Joe, Dusup Song, Jungjoon Choi, Sangyong Lim

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 14 citations in OpenAlex.

  1. Xerotolerance: A New Property inMicroorganisms · 2021
    Article
  2. The Novel ncRNA OsiR Positively Regulates Expression ofInternational journal of molecular sciences · 2020
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Deepti AppukuttanResearch Division for Biotechnology, Korea Atomic Energy Research Institute, Jeongeup, Republic of Korea.
Ho Seong SeoResearch Division for Biotechnology, Korea Atomic Energy Research Institute, Jeongeup, Republic of Korea.
Sunwook JeongResearch Division for Biotechnology, Korea Atomic Energy Research Institute, Jeongeup, Republic of Korea.
Sunghun ImResearch Division for Biotechnology, Korea Atomic Energy Research Institute, Jeongeup, Republic of Korea.
Minho JoeResearch Division for Biotechnology, Korea Atomic Energy Research Institute, Jeongeup, Republic of Korea.
Dusup SongResearch Division for Biotechnology, Korea Atomic Energy Research Institute, Jeongeup, Republic of Korea.
Jungjoon ChoiDepartment of Agricultural Biotechnology, Center for Agricultural Biomaterials, and Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul, Republic of Korea.
Sangyong LimResearch Division for Biotechnology, Korea Atomic Energy Research Institute, Jeongeup, Republic of Korea.
Korea Atomic Energy Research Institute · KRSeoul National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In order to understand the mechanism governing radiation resistance in Deinococcus radiodurans, current efforts are aimed at identifying potential candidates from a large repertoire of unique Deinococcal genes and protein families. DR0053 belongs to the DinB/YfiT protein family, which is an over-represented protein family in D. radiodurans. We observed that dr0053 transcript levels were highly induced in response to gamma radiation (γ-radiation) and mitomycin C (MMC) exposure depending on PprI, RecA and the DrtR/S two-component signal transduction system. Protein profiles demonstrated that DR0053 is a highly induced protein in cultures exposed to 10 kGy γ-radiation. We were able to determine the transcriptional start site of dr0053, which was induced upon irradiation, and to assign the 133-bp promoter region of dr0053 as essential for radiation responsiveness through primer extension and promoter deletion analyses. A dr0053 mutant strain displayed sensitivity to γ-radiation and MMC exposure, but not hydrogen peroxide, suggesting that DR0053 helps cells recover from DNA damage. Bioinformatic analyses revealed that DR0053 is similar to the Bacillus subtilis protein YjoA, which is a substrate of bacterial protein-tyrosine kinases. Taken together, the DNA damage-inducible (din) gene dr0053 may be regulated at the transcriptional and post-translational levels.

Indexed as

Bacterial ProteinsDeinococcusDNA DamageDNA Mutational AnalysisGamma RaysGene Expression Regulation, BacterialHydrogen PeroxideMitomycinMutationPromoter Regions, GeneticProtein-Tyrosine KinasesSignal TransductionTranscription, GeneticBacterial ProteinsHydrogen PeroxideMitomycinProtein-Tyrosine Kinases

Identifiers

PMID25706748
PMCPMC4338110
OpenAlexW2077929618

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.