Evidence map›Paper›PMID 25706562›Full record

ArticlePloS one2015

Pale-green phenotype of atl31atl6 double mutant leaves is caused by disruption of 5-aminolevulinic acid biosynthesis in Arabidopsis thaliana.

Shugo Maekawa, Atsushi Takabayashi, Thais Huarancca Reyes, Hiroko Yamamoto, Ayumi Tanaka, Takeo Sato, Junji Yamaguchi

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 23 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Shugo MaekawaFaculty of Science and Graduate School of Life Science, Hokkaido University, Sapporo, Hokkaido, Japan.
Atsushi TakabayashiInstitute of Low Temperature Science, Hokkaido University, Sapporo, Hokkaido, Japan.
Thais Huarancca ReyesFaculty of Science and Graduate School of Life Science, Hokkaido University, Sapporo, Hokkaido, Japan.
Hiroko YamamotoFaculty of Science and Graduate School of Life Science, Hokkaido University, Sapporo, Hokkaido, Japan.
Ayumi TanakaInstitute of Low Temperature Science, Hokkaido University, Sapporo, Hokkaido, Japan.
Takeo SatoFaculty of Science and Graduate School of Life Science, Hokkaido University, Sapporo, Hokkaido, Japan.
Junji YamaguchiFaculty of Science and Graduate School of Life Science, Hokkaido University, Sapporo, Hokkaido, Japan.
Hokkaido University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Arabidopsis ubiquitin ligases ATL31 and homologue ATL6 control the carbon/nitrogen nutrient and pathogen responses. A mutant with the loss-of-function of both atl31 and atl6 developed light intensity-dependent pale-green true leaves, whereas the single knockout mutants did not. Plastid ultrastructure and Blue Native-PAGE analyses revealed that pale-green leaves contain abnormal plastid structure with highly reduced levels of thylakoid proteins. In contrast, the pale-green leaves of the atl31/atl6 mutant showed normal Fv/Fm. In the pale-green leaves of the atl31/atl6, the expression of HEMA1, which encodes the key enzyme for 5-aminolevulinic acid synthesis, the rate-limiting step in chlorophyll biosynthesis, was markedly down-regulated. The expression of key transcription factor GLK1, which directly promotes HEMA1 transcription, was also significantly decreased in atl31/atl6 mutant. Finally, application of 5-aminolevulinic acid to the atl31/atl6 mutants resulted in recovery to a green phenotype. Taken together, these findings indicate that the 5-aminolevulinic acid biosynthesis step was inhibited through the down-regulation of chlorophyll biosynthesis-related genes in the pale-green leaves of atl31/atl6 mutant.

Indexed as

Aminolevulinic AcidArabidopsisArabidopsis ProteinsChlorophyllDown-RegulationGene Expression Regulation, PlantMutationPhenotypePlant LeavesPlastidsThylakoidsTranscription FactorsTranscription, GeneticUbiquitin-Protein LigasesAminolevulinic AcidArabidopsis ProteinsATL31 protein, ArabidopsisChlorophyllTranscription FactorsUbiquitin-Protein Ligases

Identifiers

PMID25706562
PMCPMC4338271
OpenAlexW1966876420

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.