Evidence map›Paper›PMID 25706392›Full record

ArticlePLoS neglected tropical diseases2015

Comparison of two quantitative real time PCR assays for Rickettsia detection in patients from Tunisia.

Abir Znazen, Hanen Sellami, Emna Elleuch, Zouhour Hattab, Laroussi Ben Sassi, Fatma Khrouf, Hassen Dammak, Amel Letaief, Mounir Ben Jemaa, Adnene Hammami

Open access · goldAbstract readComparative Study
In one paragraph

Article in PLoS neglected tropical diseases, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.8field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 39 citations in OpenAlex.

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  3. Pathogens (Basel, Switzerland) · 2024
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  5. Spotted fever diagnosis using molecular methods.Revista da Sociedade Brasileira de Medicina Tropical · 2024
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  6. Review
  7. Review
  8. Genetic typing of isolates of Rickettsia typhi.PLoS neglected tropical diseases · 2022
    Article
  9. Article
  10. An Update on the Laboratory Diagnosis ofPathogens (Basel, Switzerland) · 2021
    Review
  11. Empirical treatment with doxycycline of fever of intermediate duration.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2021
    Article
  12. Article
  13. Review
  14. Diagnosis of spotted fever groupEpidemiology and infection · 2019
    Review
  15. Article
  16. Review
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Abir ZnazenLaboratory of Microbiology, Research Laboratory "MPH", Habib Bourguiba University Hospital of Sfax, Sfax University, Sfax, Tunisia.
Hanen SellamiLaboratory of Microbiology, Research Laboratory "MPH", Habib Bourguiba University Hospital of Sfax, Sfax University, Sfax, Tunisia.
Emna ElleuchInfectious diseases department, Hedi Chaker University Hospital of Sfax, Sfax University, Sfax, Tunisia.
Zouhour HattabInfectious diseases department, Farhat Hached University Hospital of Sousse, Sousse, Tunisia.
Laroussi Ben SassiMedical department, Regional Hospital of Zarzis, Zarzis, Tunisia.
Fatma KhroufLaboratory of entomology, Pasteur Institute of Tunis, Tunis, Tunisia.
Hassen DammakIntensive care unit, Habib Bourguiba University Hospital of Sfax, Sfax University, Sfax, Tunisia.
Amel LetaiefInfectious diseases department, Farhat Hached University Hospital of Sousse, Sousse, Tunisia.
Mounir Ben JemaaInfectious diseases department, Hedi Chaker University Hospital of Sfax, Sfax University, Sfax, Tunisia.
Adnene HammamiLaboratory of Microbiology, Research Laboratory "MPH", Habib Bourguiba University Hospital of Sfax, Sfax University, Sfax, Tunisia.
Hôpital Farhat Hached · TNHopital Universitaire Hedi Chaker · TNHôpital Razi de La Manouba · TNInstitut Pasteur de Tunis · TN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

BACKGROUND AND

objectivesQuantitative real time PCR (qPCR) offers rapid diagnosis of rickettsial infections. Thus, successful treatment could be initiated to avoid unfavorable outcome. Our aim was to compare two qPCR assays for Rickettsia detection and to evaluate their contribution in early diagnosis of rickettsial infection in Tunisian patients. PATIENTS AND

methodsIncluded patients were hospitalized in different hospitals in Tunisia from 2007 to 2012. Serology was performed by microimmunofluorescence assay using R. conorii and R. typhi antigens. Two duplex qPCRs, previously reported, were performed on collected skin biopsies and whole blood samples. The first duplex amplified all Rickettsia species (PanRick) and Rickettsia typhi DNA (Rtt). The second duplex detected spotted fever group Rickettsiae (RC00338) and typhus group Rickettsiae DNA (Rp278).

resultsDiagnosis of rickettsiosis was confirmed in 82 cases (57.7%). Among 44 skin biopsies obtained from patients with confirmed diagnosis, the first duplex was positive in 24 samples (54.5%), with three patients positive by Rtt qPCR. Using the second duplex, positivity was noted in 21 samples (47.7%), with two patients positive by Rp278 qPCR. Among79 whole blood samples obtained from patients with confirmed diagnosis, panRick qPCR was positive in 5 cases (6.3%) among which two were positive by Rtt qPCR. Using the second set of qPCRs, positivity was noted in four cases (5%) with one sample positive by Rp278 qPCR. Positivity rates of the two duplex qPCRs were significantly higher among patients presenting with negative first serum than those with already detectable antibodies.

conclusionsUsing qPCR offers a rapid diagnosis. The PanRick qPCR showed a higher sensitivity. Our study showed that this qPCR could offer a prompt diagnosis at the early stage of the disease. However, its implementation in routine needs cost/effectiveness evaluation.

Indexed as

AdultAntigens, BacterialDNA, BacterialEarly DiagnosisFemaleFluorescent Antibody TechniqueHumansMaleMiddle AgedReal-Time Polymerase Chain ReactionRickettsia typhiTunisiaTyphus, Endemic Flea-BorneAntigens, BacterialDNA, Bacterial

Identifiers

PMID25706392
PMCPMC4338037
OpenAlexW2035410964

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.