ArticleFrontiers in plant science2015
Chloroplast genome of Aconitum barbatum var. puberulum (Ranunculaceae) derived from CCS reads using the PacBio RS platform.
Article in Frontiers in plant science, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
35 citing papers in PubMed, 71 citations in OpenAlex.
- Comparative analyses of the plastid genomes and their phylogenetic implications in tribe delphinieae (Ranunculaceae).BMC plant biology · 2026Article
- Comparative chloroplast genome analyses of cultivated and wild Capsicum species shed light on evolution and phylogeny.BMC plant biology · 2024Article
- Complete plastome genomes of three medicinal heliotropiaceae species: comparative analyses and phylogenetic relationships.BMC plant biology · 2024Article
- A review on efforts for improvement in medicinally important chemical constituents in3 Biotech · 2023Review
- The First Complete Chloroplast Genome ofGenes · 2023Article
- Comparative chloroplast genomics of 34 species in subtribe Swertiinae (Gentianaceae) with implications for its phylogeny.BMC plant biology · 2023Article
- Complete chloroplast genome sequences of the medicinal plant Aconitum transsectum (Ranunculaceae): comparative analysis and phylogenetic relationships.BMC genomics · 2023Article
- Plastomes ofPlants (Basel, Switzerland) · 2023Article
- The complete chloroplast genome sequence ofMitochondrial DNA. Part B, Resources · 2023Article
- Application of third-generation sequencing to herbal genomics.Frontiers in plant science · 2023Review
- Screening of Differentially Expressed Genes and Localization Analysis of Female Gametophyte at the Free Nuclear Mitosis Stage inInternational journal of molecular sciences · 2022Article
- The complete chloroplast genome of the Chinese banyan treeMitochondrial DNA. Part B, Resources · 2022Article
- The complete chloroplast genome ofMitochondrial DNA. Part B, Resources · 2021Article
- Combined Transcriptome Analysis Reveals the Ovule Abortion Regulatory Mechanisms in the Female Sterile Line ofInternational journal of molecular sciences · 2021Article
- Two Korean EndemicPlants (Basel, Switzerland) · 2021Article
- Chloroplast Genomes of Two Species ofFrontiers in plant science · 2021Article
- Complete chloroplast genomes of four Physalis species (Solanaceae): lights into genome structure, comparative analysis, and phylogenetic relationships.BMC plant biology · 2020Article
- Comparative analysis of fourPeerJ · 2020Article
- Analyzing and Characterizing the Chloroplast Genome ofBioMed research international · 2019Article
- Biomonitoring for traditional herbal medicinal products using DNA metabarcoding and single molecule, real-time sequencing.Acta pharmaceutica Sinica. B · 2018Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
5 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The chloroplast genome (cp genome) of Aconitum barbatum var. puberulum was sequenced using the third-generation sequencing platform based on the single-molecule real-time (SMRT) sequencing approach. To our knowledge, this is the first reported complete cp genome of Aconitum, and we anticipate that it will have great value for phylogenetic studies of the Ranunculaceae family. In total, 23,498 CCS reads and 20,685,462 base pairs were generated, the mean read length was 880 bp, and the longest read was 2,261 bp. Genome coverage of 100% was achieved with a mean coverage of 132× and no gaps. The accuracy of the assembled genome is 99.973%; the assembly was validated using Sanger sequencing of six selected genes from the cp genome. The complete cp genome of A. barbatum var. puberulum is 156,749 bp in length, including a large single-copy region of 87,630 bp and a small single-copy region of 16,941 bp separated by two inverted repeats of 26,089 bp. The cp genome contains 130 genes, including 84 protein-coding genes, 34 tRNA genes and eight rRNA genes. Four forward, five inverted and eight tandem repeats were identified. According to the SSR analysis, the longest poly structure is a 20-T repeat. Our results presented in this paper will facilitate the phylogenetic studies and molecular authentication on Aconitum.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.