Evidence map›Paper›PMID 25703375›Full record

ArticleStructure (London, England : 1993)2015

A conserved activation cluster is required for allosteric communication in HtrA-family proteases.

Anna K de Regt, Seokhee Kim, Jungsan Sohn, Robert A Grant, Tania A Baker, Robert T Sauer

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Properties of the HtrA Protease From BacteriumFrontiers in microbiology · 2019
    Article
  8. Article
  9. Article
  10. Article
  11. Amino-Terminal Processing ofFrontiers in microbiology · 2018
    Article
  12. Article
  13. Article
  14. ThePeerJ · 2017
    Article
  15. Article
  16. Steric clashes with bound OMP peptides activate the DegS stress-response protease.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Anna K de RegtDepartment of Biology, Massachusetts Institute of Technology, 31 Ames Street, Cambridge, MA 02139, USA.
Seokhee KimDepartment of Biology, Massachusetts Institute of Technology, 31 Ames Street, Cambridge, MA 02139, USA.
Jungsan SohnDepartment of Biology, Massachusetts Institute of Technology, 31 Ames Street, Cambridge, MA 02139, USA.
Robert A GrantDepartment of Biology, Massachusetts Institute of Technology, 31 Ames Street, Cambridge, MA 02139, USA.
Tania A BakerDepartment of Biology, Massachusetts Institute of Technology, 31 Ames Street, Cambridge, MA 02139, USA; Howard Hughes Medical Institute, Massachusetts Institute of Technology, 31 Ames Street, Cambridge, MA 02139, USA.
Robert T SauerDepartment of Biology, Massachusetts Institute of Technology, 31 Ames Street, Cambridge, MA 02139, USA. Electronic address: bobsauer@mit.edu.
Massachusetts Institute of Technology · USHoward Hughes Medical Institute · US

Funding

REPRESSOR &ANTIREPRESSOR PROTEINS OF BACTERIOPHAGER01AI016892 · NIAID · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BAKER, TANIA A, SAUER, ROBERT T · 1985 to 2022
$13.0M
Howard Hughes Medical InstituteNIAID NIH HHS AI-16892NIAID NIH HHS R01 AI016892
6 · The paper itself

Abstract

In E. coli, outer-membrane stress causes a transcriptional response through a signaling cascade initiated by DegS cleavage of a transmembrane antisigma factor. Each subunit of DegS, an HtrA-family protease, contains a protease domain and a PDZ domain. The trimeric protease domain is autoinhibited by the unliganded PDZ domains. Allosteric activation requires binding of unassembled outer-membrane proteins (OMPs) to the PDZ domains and protein substrate binding. Here, we identify a set of DegS residues that cluster together at subunit-subunit interfaces in the trimer, link the active sites and substrate binding sites, and are crucial for stabilizing the active enzyme conformation in response to OMP signaling. These residues are conserved across the HtrA-protease family, including orthologs linked to human disease, supporting a common mechanism of allosteric activation. Indeed, mutation of residues at homologous positions in the DegP quality-control protease also eliminates allosteric activation.

Indexed as

Allosteric RegulationAmino Acid SequenceCatalytic DomainConserved SequenceCrystallography, X-RayHeat-Shock ProteinsModels, MolecularPeriplasmic ProteinsSerine EndopeptidasesSubstrate SpecificityDegP proteaseHeat-Shock ProteinsPeriplasmic ProteinsSerine Endopeptidases

Identifiers

PMID25703375
PMCPMC4351158
OpenAlexW2023075696

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.