Evidence map›Paper›PMID 25701875›Full record

ArticleHuman molecular genetics2015

Targeted sequencing of the Paget's disease associated 14q32 locus identifies several missense coding variants in RIN3 that predispose to Paget's disease of bone.

Mahéva Vallet, Dinesh C Soares, Sachin Wani, Antonia Sophocleous, Jon Warner, Donald M Salter, Stuart H Ralston, Omar M E Albagha

Open access · hybridAbstract read
In one paragraph

Article in Human molecular genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed, 1 pooled it
1.7field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 1 synthesis or guideline pooled it, 32 citations in OpenAlex.

  1. Pooled it
  2. Science advances · 2026
    Article
  3. Article
  4. Article
  5. Update on the pathogenesis and genetics of Paget's disease of bone.Frontiers in cell and developmental biology · 2022
    Review
  6. Article
  7. Ras and Rab Interactor 3: From Cellular Mechanisms to Human Diseases.Frontiers in cell and developmental biology · 2022
    Review
  8. Article
  9. Genetic Determinants of Paget's Disease of Bone.Current osteoporosis reports · 2021
    Review
  10. Rab GTPases in Osteoclastic Bone Resorption and Autophagy.International journal of molecular sciences · 2020
    Review
  11. Article
  12. Article
  13. Targeted sequencing ofBone reports · 2019
    Article
  14. Paget's Disease of Bone.Calcified tissue international · 2019
    Review
  15. Human Genetics of Sclerosing Bone Disorders.Current osteoporosis reports · 2018
    Review
  16. Review
  17. Rab GTPases in Osteoclastic Endomembrane Systems.BioMed research international · 2018
    Review
  18. Review
  19. Clinical and Genetic Advances in Paget's Disease of Bone: a Review.Clinical reviews in bone and mineral metabolism · 2017
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Mahéva ValletRheumatology and Bone Disease Section, Centre for Genomic & Experimental Medicine.
Dinesh C SoaresMRC Human Genetics Unit and Centre for Genomic & Experimental Medicine and.
Sachin WaniRheumatology and Bone Disease Section, Centre for Genomic & Experimental Medicine.
Antonia SophocleousRheumatology and Bone Disease Section, Centre for Genomic & Experimental Medicine.
Jon WarnerSouth East Scotland Clinical Genetics Service, Centre for Genomic & Experimental Medicine, Institute of Genetics and Molecular Medicine, Western General Hospital, University of Edinburgh, Edinburgh EH4 2XU, UK.
Donald M SalterRheumatology and Bone Disease Section, Centre for Genomic & Experimental Medicine.
Stuart H RalstonRheumatology and Bone Disease Section, Centre for Genomic & Experimental Medicine.
Omar M E AlbaghaRheumatology and Bone Disease Section, Centre for Genomic & Experimental Medicine omar.albagha@igmm.ed.ac.uk.
Centre For Human Genetics · INUniversity of Edinburgh · GB

Funding

Arthritis Research UK 18163Arthritis Research UK 18304Arthritis Research UK 19799European Research Council 311723Medical Research Council 09-800-05Versus Arthritis 18163Wellcome Trust
6 · The paper itself

Abstract

Paget's disease of bone (PDB) is a common disorder with a strong genetic component characterized by increased but disorganized bone remodelling. Previous genome-wide association studies identified a locus on chromosome 14q32 tagged by rs10498635 which was significantly associated with susceptibility to PDB in several European populations. Here we conducted fine-mapping and targeted sequencing of the candidate locus to identify possible functional variants. Imputation in 741 PDB patients and 2699 controls confirmed that the association was confined to a 60 kb region in the RIN3 gene and conditional analysis adjusting for rs10498635 identified no new independent signals. Sequencing of the RIN3 gene identified a common missense variant (p.R279C) that was strongly associated with the disease (OR = 0.64; P = 1.4 × 10(-9)), and was in strong linkage disequilibrium with rs10498635. A further 13 rare missense variants were identified, seven of which were novel and detected only in PDB cases. When combined, these rare variants were over-represented in cases compared with controls (OR = 3.72; P = 8.9 × 10(-10)). Most rare variants were located in a region that encodes a proline-rich, intrinsically disordered domain of the protein and many were predicted to be pathogenic. RIN3 was expressed in bone tissue and its expression level was ∼10-fold higher in osteoclasts compared with osteoblasts. We conclude that susceptibility to PDB at the 14q32 locus is mediated by a combination of common and rare coding variants in RIN3 and suggest that RIN3 may contribute to PDB susceptibility by affecting osteoclast function.

Indexed as

AnimalsBase SequenceCarrier ProteinsCase-Control StudiesCells, CulturedChromosomes, Human, Pair 14DNA Mutational AnalysisGene ExpressionGenetic Predisposition to DiseaseGenome-Wide Association StudyGuanine Nucleotide Exchange FactorsHumansLinkage DisequilibriumMiceMutation, MissenseOsteitis DeformansCarrier ProteinsGuanine Nucleotide Exchange FactorsRIN3 protein, human

Identifiers

PMID25701875
PMCPMC4424954
OpenAlexW2132525191

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.