Evidence map›Paper›PMID 25701868›Full record

ArticleThe Journal of infectious diseases2015

The Interplay Between Host Genetic Variation, Viral Replication, and Microbial Translocation in Untreated HIV-Infected Individuals.

Molly R Perkins, Istvan Bartha, J Katherina Timmer, Julia C Liebner, David Wolinsky, David Wollinsky, Huldrych F Günthard, Christoph Hauser, Enos Bernasconi, Matthias Hoffmann and 6 more

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in The Journal of infectious diseases, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 23 citations in OpenAlex.

  1. Trial
  2. Matrix Metalloproteinase-9 Signaling Regulates Colon Barrier Integrity in Models of HIV Infection.Journal of neuroimmune pharmacology : the official journal of the Society on NeuroImmune Pharmacology · 2024
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors at 7 institutions in 3 countries.

Molly R PerkinsHuman Immunology Section, Vaccine Research Center, National Institute of Allergy and Infectious Disease, National Institutes of Health, Bethesda, Maryland.
Istvan BarthaGlobal Health Institute, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne Swiss Institute of Bioinformatics, Lausanne Institute of Microbiology, University Hospital and University of Lausanne.
J Katherina TimmerHuman Immunology Section, Vaccine Research Center, National Institute of Allergy and Infectious Disease, National Institutes of Health, Bethesda, Maryland.
Julia C LiebnerHuman Immunology Section, Vaccine Research Center, National Institute of Allergy and Infectious Disease, National Institutes of Health, Bethesda, Maryland.
David WolinskyHuman Immunology Section, Vaccine Research Center, National Institute of Allergy and Infectious Disease, National Institutes of Health, Bethesda, Maryland.
David WollinskyHuman Immunology Section, Vaccine Research Center, National Institute of Allergy and Infectious Disease, National Institutes of Health, Bethesda, Maryland.
Huldrych F GünthardDivision of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich and University of Zurich.
Christoph HauserUniversity Clinic of Infectious Diseases, University Hospital Bern and University of Bern.
Enos BernasconiDivision of Infectious Diseases, Regional Hospital Lugano.
Matthias HoffmannDivision of Infectious Diseases and Hospital Epidemiology, Cantonal Hospital St Gallen.
Alexandra CalmyHIV Unit, Department of Internal Medicine, Geneva University Hospital.
Manuel BattegayDivision of Infectious Diseases and Hospital Epidemiology, Departments of Clinical and Biomedical Research, University Hospital Basel, University of Basel, Switzerland.
Amalio TelentiInstitute of Microbiology, University Hospital and University of Lausanne.
Daniel C DouekHuman Immunology Section, Vaccine Research Center, National Institute of Allergy and Infectious Disease, National Institutes of Health, Bethesda, Maryland.
Jacques FellayGlobal Health Institute, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne Swiss Institute of Bioinformatics, Lausanne.
Swiss HIV Cohort Study
Czech Academy of Sciences, Institute of Microbiology · CZGeneva College · USKantonsspital St. Gallen · CHOspedale regionale di Lugano · CHUniversity of Basel · CHUniversity of Bern · CHUniversity of Zurich · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Systemic immune activation, a major determinant of human immunodeficiency virus (HIV) disease progression, is the result of a complex interplay between viral replication, dysregulation of the immune system, and microbial translocation due to gut mucosal damage. Although human genetic variants influencing HIV load have been identified, it is unknown how much the host genetic background contributes to interindividual differences in other determinants of HIV pathogenesis such as gut damage and microbial translocation. Using samples and data from 717 untreated participants in the Swiss HIV Cohort Study and a genome-wide association study design, we searched for human genetic determinants of plasma levels of intestinal fatty acid-binding protein (I-FABP/FABP2), a marker of gut damage, and of soluble CD14 (sCD14), a marker of lipopolysaccharide bioactivity and microbial translocation. We also assessed the correlations between HIV load, sCD14, and I-FABP. Although we found no genome-wide significant determinant of the tested plasma markers, we observed strong associations between sCD14 and both HIV load and I-FABP, shedding new light on the relationships between processes that drive progression of untreated HIV infection.

Indexed as

Genetic Predisposition to DiseaseAdultAnti-HIV AgentsBiomarkersCohort StudiesFatty Acid-Binding ProteinsFemaleGene Expression RegulationGenotypeHIV-1HIV InfectionsHumansLipopolysaccharide ReceptorsMaleSwitzerlandTranslocation, GeneticAnti-HIV AgentsBiomarkersFatty Acid-Binding ProteinsLipopolysaccharide Receptorsgenome-wide association studyHIVhost genomicsI-FABPimmune activationmicrobial translocationsCD14

Identifiers

PMID25701868
PMCPMC4539895
OpenAlexW2003488643

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.