Evidence map›Paper›PMID 25701596›Full record

ArticleGene2015

Genomic and proteomic features of mycobacteriophage SWU1 isolated from China soil.

Xiangyu Fan, Jianlong Yan, Longxiang Xie, Lanying Zeng, Ryland F Young, Jianping Xie

Abstract read
In one paragraph

Article in Gene, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Mycobacteriophages and Their Applications.Antibiotics (Basel, Switzerland) · 2024
    Review
  5. Heliyon · 2024
    Article
  6. Isolation and characterization of a novel mycobacteriophage Kashi-VT1 infectingFrontiers in cellular and infection microbiology · 2023
    Article
  7. Review
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Xiangyu FanInstitute of Modern Biopharmaceuticals, State Key Laboratory Breeding Base of Eco-Environment and Bio-Resource of the Three Gorges Area, Key Laboratory of Eco-environment of Three Gorges Reservoir, Ministry of Education, School of Life Sciences, Southwest University, Chongqing 400715, China; School of Biological Science and Technology, University of Jinan, Shandong 250022, China. Electronic address: fxysnd@126.com.
Jianlong YanInstitute of Modern Biopharmaceuticals, State Key Laboratory Breeding Base of Eco-Environment and Bio-Resource of the Three Gorges Area, Key Laboratory of Eco-environment of Three Gorges Reservoir, Ministry of Education, School of Life Sciences, Southwest University, Chongqing 400715, China. Electronic address: 519465867@qq.com.
Longxiang XieInstitute of Modern Biopharmaceuticals, State Key Laboratory Breeding Base of Eco-Environment and Bio-Resource of the Three Gorges Area, Key Laboratory of Eco-environment of Three Gorges Reservoir, Ministry of Education, School of Life Sciences, Southwest University, Chongqing 400715, China. Electronic address: xielongxiang123@126.com.
Lanying ZengCenter for Phage Technology, Department of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843-2128, USA. Electronic address: lzeng@tamu.edu.
Ryland F YoungCenter for Phage Technology, Department of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843-2128, USA. Electronic address: ryland@tamu.edu.
Jianping XieInstitute of Modern Biopharmaceuticals, State Key Laboratory Breeding Base of Eco-Environment and Bio-Resource of the Three Gorges Area, Key Laboratory of Eco-environment of Three Gorges Reservoir, Ministry of Education, School of Life Sciences, Southwest University, Chongqing 400715, China. Electronic address: georgex@swu.edu.cn.

Funding

CONTROL OF VIRUS-INDUCED LYSISR01GM027099 · NIGMS · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI YOUNG, RYLAND FLETCHER · 1985 to 2019
$4.6M
NIGMS NIH HHS R01 GM027099
6 · The paper itself

Abstract

Mycobacteriophage SWU1 is a newly isolated phage from soil sample collected in Sichuan province, China using Mycobacterium smegmatis mc(2)155 as host. Plaque, phage morphology and one-step growth curve were characterized. The complete genomic sequence of phage SWU1 was determined by shotgun sequencing. The ends of SWU1 were determined. Structural proteins of SWU1 were analyzed by NanoLC-ESI-MS/MS. Seven ORFs were identified as structural protein encoded by SWU1 genome. The genetic basis underlying the SWU1 plaque was explored using comparative genomics. Prophages homologous to SWU1 were identified in two pathogens, Segniliparus rugosus ATCC BAA-974 and Mycobacterium rhodesiae JS60. Genus Segniliparus is a member of the order Corynebacteriales. To our knowledge, this is the first report of Mycobacterium prophages in different genera.

Indexed as

Base SequenceChinaDNA, ViralGene DeletionGenome, ViralMutagenesis, InsertionalMycobacteriophagesMycobacterium smegmatisOpen Reading FramesProteomicsSequence Analysis, DNASoil MicrobiologyTandem Mass SpectrometryViral Plaque AssayViral ProteinsDNA, ViralViral ProteinsElectron microscopyGenomeMycobacteriophagePlaqueProteome

Identifiers

PMID25701596
PMCPMC5066301

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.