Evidence map›Paper›PMID 25701384›Full record

ArticleInsect biochemistry and molecular biology2015

Phylogenetic analysis and expression profiling of the pattern recognition receptors: Insights into molecular recognition of invading pathogens in Manduca sexta.

Xiufeng Zhang, Yan He, Xiaolong Cao, Ramesh T Gunaratna, Yun-ru Chen, Gary Blissard, Michael R Kanost, Haobo Jiang

Open access · greenAbstract read
In one paragraph

Article in Insect biochemistry and molecular biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 54 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Role of Lectin in the Response ofFrontiers in immunology · 2022
    Review
  10. Insects · 2021
    Article
  11. Article
  12. Review
  13. Article
  14. Digestion-related proteins in the tobacco hornworm, Manduca sexta.Insect biochemistry and molecular biology · 2020
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Insect immunology and hematopoiesis.Developmental and comparative immunology · 2016
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Xiufeng ZhangDepartment of Entomology and Plant Pathology, Oklahoma State University, Stillwater, OK 74078, USA.
Yan HeDepartment of Entomology and Plant Pathology, Oklahoma State University, Stillwater, OK 74078, USA.
Xiaolong CaoDepartment of Entomology and Plant Pathology, Oklahoma State University, Stillwater, OK 74078, USA.
Ramesh T GunaratnaDepartment of Entomology and Plant Pathology, Oklahoma State University, Stillwater, OK 74078, USA.
Yun-ru ChenBoyce Thompson Institute, Cornell University, Ithaca, NY 14853, USA.
Gary BlissardBoyce Thompson Institute, Cornell University, Ithaca, NY 14853, USA.
Michael R KanostDepartment of Biochemistry and Molecular Biophysics, Kansas State University, Manhattan, KS 66506, USA.
Haobo JiangDepartment of Entomology and Plant Pathology, Oklahoma State University, Stillwater, OK 74078, USA. Electronic address: haobo.jiang@okstate.edu.
Oklahoma State University · USCornell University · USKansas State University · US

Funding

Initiation and Regulation of Prophenoloxidase ActivationR01GM058634 · NIGMS · OKLAHOMA STATE UNIVERSITY STILLWATER · PI JIANG, HAOBO · 1999 to 2022
$4.0M
Supplement 2 to promote diversity in health related res.: protease systems in insR37GM041247 · NIGMS · KANSAS STATE UNIVERSITY · PI KANOST, MICHAEL R · 2011 to 2020
$3.8M
SERINE PROTEINASE INHIBITORS IN INSECTSR01GM041247 · NIGMS · KANSAS STATE UNIVERSITY · PI KANOST, MICHAEL R · 1994 to 2010
$3.1M
SERINE PROTEINASE INHIBITORS IN INSECTSR29GM041247 · NIGMS · UNIVERSITY OF ARIZONA · PI KANOST, MICHAEL R. · 1989 to 1993
–
NIGMS NIH HHS GM041247NIGMS NIH HHS GM58634NIGMS NIH HHS R01 GM041247NIGMS NIH HHS R01 GM058634NIGMS NIH HHS R37 GM041247
6 · The paper itself

Abstract

Pattern recognition receptors (PRRs) detect microbial pathogens and trigger innate immune responses. Previous biochemical studies have elucidated the physiological functions of eleven PRRs in Manduca sexta but our understanding of the recognition process is still limited, lacking genomic perspectives. While 34 C-type lectin-domain proteins and 16 Toll-like receptors are reported in the companion papers, we present here 120 other putative PRRs identified through the genome annotation. These include 76 leucine-rich repeat (LRR) proteins, 14 peptidoglycan recognition proteins, 6 EGF/Nim-domain proteins, 5 β-1,3-glucanase-related proteins, 4 galectins, 4 fibrinogen-related proteins, 3 thioester proteins, 5 immunoglobulin-domain proteins, 2 hemocytins, and 1 Reeler. Sequence alignment and phylogenetic analysis reveal the evolution history of a diverse repertoire of proteins for pathogen recognition. While functions of insect LRR proteins are mostly unknown, their structure diversification is phenomenal: In addition to the Toll homologs, 22 LRR proteins with a signal peptide are expected to be secreted; 18 LRR proteins lacking signal peptides may be cytoplasmic; 36 LRRs with a signal peptide and a transmembrane segment may be non-Toll receptors on the surface of cells. Expression profiles of the 120 genes in 52 tissue samples reflect complex regulation in various developmental stages and physiological states, including some likely by Rel family transcription factors via κB motifs in the promoter regions. This collection of information is expected to facilitate future biochemical studies detailing their respective roles in this model insect.

Indexed as

PhylogenyAnimalsGene Expression ProfilingGenome, InsectImmunity, InnateInsect ProteinsManducaMolecular Sequence AnnotationProtein Structure, TertiaryReceptors, Pattern RecognitionTranscription, GeneticInsect ProteinsReceptors, Pattern RecognitionGenome annotationHemolymph proteinsInsect immunityRNA-SeqTranscriptome

Identifiers

PMID25701384
PMCPMC4476941
OpenAlexW2055781554

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.