Evidence map›Paper›PMID 25700084›Full record

ArticlePloS one2015

Effects of N-glycosylation site removal in archaellins on the assembly and function of archaella in Methanococcus maripaludis.

Yan Ding, Kaoru Uchida, Shin-Ichi Aizawa, Kathleen Murphy, Alison Berezuk, Cezar M Khursigara, James P J Chong, Ken F Jarrell

Abstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Frontiers in microbiology · 2019
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. The archaellum: how Archaea swim.Frontiers in microbiology · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Yan DingDepartment of Biomedical and Molecular Sciences, Queen's University, Kingston, Ontario, Canada.
Kaoru UchidaDepartment of Life Sciences, Prefectural University of Hiroshima, 562 Nanatsuka, Shobara, Hiroshima, Japan.
Shin-Ichi AizawaDepartment of Life Sciences, Prefectural University of Hiroshima, 562 Nanatsuka, Shobara, Hiroshima, Japan.
Kathleen MurphyDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, Canada.
Alison BerezukDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, Canada.
Cezar M KhursigaraDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, Canada.
James P J ChongDepartment of Biology, University of York, Heslington, York, United Kingdom.
Ken F JarrellDepartment of Biomedical and Molecular Sciences, Queen's University, Kingston, Ontario, Canada.

Funding

Biotechnology and Biological Sciences Research Council BB/F003099/1
6 · The paper itself

Abstract

In Methanococcus maripaludis S2, the swimming organelle, the archaellum, is composed of three archaellins, FlaB1S2, FlaB2S2 and FlaB3S2. All three are modified with an N-linked tetrasaccharide at multiple sites. Disruption of the N-linked glycosylation pathway is known to cause defects in archaella assembly or function. Here, we explored the potential requirement of N-glycosylation of archaellins on archaellation by investigating the effects of eliminating the 4 N-glycosylation sites in the wildtype FlaB2S2 protein in all possible combinations either by Asn to Glu (N to Q) substitution or Asn to Asp (N to D) substitutions of the N-glycosylation sequon asparagine. The ability of these mutant derivatives to complement a non-archaellated ΔflaB2S2 strain was examined by electron microscopy (for archaella assembly) and swarm plates (for analysis of swimming). Western blot results showed that all mutated FlaB2S2 proteins were expressed and of smaller apparent molecular mass compared to wildtype FlaB2S2, consistent with the loss of glycosylation sites. In the 8 single-site mutant complements, archaella were observed on the surface of Q2, D2 and D4 (numbers after N or Q refer to the 1st to 4th glycosylation site). Of the 6 double-site mutation complementations all were archaellated except D1,3. Of the 4 triple-site mutation complements, only D2,3,4 was archaellated. Elimination of all 4 N-glycosylation sites resulted in non-archaellated cells, indicating some minimum amount of archaellin glycosylation was necessary for their incorporation into stable archaella. All complementations that led to a return of archaella also resulted in motile cells with the exception of the D4 version. In addition, a series of FlaB2S2 scanning deletions each missing 10 amino acids was also generated and tested for their ability to complement the ΔflaB2S2 strain. While most variants were expressed, none of them restored archaellation, although FlaB2S2 harbouring a smaller 3-amino acid deletion was able to partially restore archaellation.

Indexed as

Protein Processing, Post-TranslationalAmino Acid SequenceAmino Acid SubstitutionArchaeal ProteinsBinding SitesConserved SequenceFlagellinGlycosylationMethanococcusMolecular Sequence DataArchaeal ProteinsFlagellin

Identifiers

PMID25700084
PMCPMC4336324

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.