Evidence map›Paper›PMID 25699591›Full record

ArticlePlant physiology2015

FYVE1 is essential for vacuole biogenesis and intracellular trafficking in Arabidopsis.

Cornelia Kolb, Marie-Kristin Nagel, Kamila Kalinowska, Jörg Hagmann, Mie Ichikawa, Franziska Anzenberger, Angela Alkofer, Masa H Sato, Pascal Braun, Erika Isono

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Plant physiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 65 papers.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed
6.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed, 125 citations in OpenAlex.

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  18. Frontiers in microbiology · 2023
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5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Cornelia KolbPlant Systems Biology, Technische Universität München, 85354 Freising, Germany (C.K., M.-K.N., K.K., F.A., A.A., P.B., E.I.);Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tuebingen, Germany (J.H.); andDepartment of Life and Environmental Sciences, Kyoto Prefectural University, Sakyo-ku, Kyoto 606-8522, Japan (M.I., M.H.S.).
Marie-Kristin NagelPlant Systems Biology, Technische Universität München, 85354 Freising, Germany (C.K., M.-K.N., K.K., F.A., A.A., P.B., E.I.);Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tuebingen, Germany (J.H.); andDepartment of Life and Environmental Sciences, Kyoto Prefectural University, Sakyo-ku, Kyoto 606-8522, Japan (M.I., M.H.S.).
Kamila KalinowskaPlant Systems Biology, Technische Universität München, 85354 Freising, Germany (C.K., M.-K.N., K.K., F.A., A.A., P.B., E.I.);Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tuebingen, Germany (J.H.); andDepartment of Life and Environmental Sciences, Kyoto Prefectural University, Sakyo-ku, Kyoto 606-8522, Japan (M.I., M.H.S.).
Jörg HagmannPlant Systems Biology, Technische Universität München, 85354 Freising, Germany (C.K., M.-K.N., K.K., F.A., A.A., P.B., E.I.);Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tuebingen, Germany (J.H.); andDepartment of Life and Environmental Sciences, Kyoto Prefectural University, Sakyo-ku, Kyoto 606-8522, Japan (M.I., M.H.S.).
Mie IchikawaPlant Systems Biology, Technische Universität München, 85354 Freising, Germany (C.K., M.-K.N., K.K., F.A., A.A., P.B., E.I.);Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tuebingen, Germany (J.H.); andDepartment of Life and Environmental Sciences, Kyoto Prefectural University, Sakyo-ku, Kyoto 606-8522, Japan (M.I., M.H.S.).
Franziska AnzenbergerPlant Systems Biology, Technische Universität München, 85354 Freising, Germany (C.K., M.-K.N., K.K., F.A., A.A., P.B., E.I.);Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tuebingen, Germany (J.H.); andDepartment of Life and Environmental Sciences, Kyoto Prefectural University, Sakyo-ku, Kyoto 606-8522, Japan (M.I., M.H.S.).
Angela AlkoferPlant Systems Biology, Technische Universität München, 85354 Freising, Germany (C.K., M.-K.N., K.K., F.A., A.A., P.B., E.I.);Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tuebingen, Germany (J.H.); andDepartment of Life and Environmental Sciences, Kyoto Prefectural University, Sakyo-ku, Kyoto 606-8522, Japan (M.I., M.H.S.).
Masa H SatoPlant Systems Biology, Technische Universität München, 85354 Freising, Germany (C.K., M.-K.N., K.K., F.A., A.A., P.B., E.I.);Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tuebingen, Germany (J.H.); andDepartment of Life and Environmental Sciences, Kyoto Prefectural University, Sakyo-ku, Kyoto 606-8522, Japan (M.I., M.H.S.).
Pascal BraunPlant Systems Biology, Technische Universität München, 85354 Freising, Germany (C.K., M.-K.N., K.K., F.A., A.A., P.B., E.I.);Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tuebingen, Germany (J.H.); andDepartment of Life and Environmental Sciences, Kyoto Prefectural University, Sakyo-ku, Kyoto 606-8522, Japan (M.I., M.H.S.).
Erika IsonoPlant Systems Biology, Technische Universität München, 85354 Freising, Germany (C.K., M.-K.N., K.K., F.A., A.A., P.B., E.I.);Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tuebingen, Germany (J.H.); andDepartment of Life and Environmental Sciences, Kyoto Prefectural University, Sakyo-ku, Kyoto 606-8522, Japan (M.I., M.H.S.) erika.isono@wzw.tum.de.
Technical University of Munich · DEKyoto Prefectural University · JPMax Planck Institute for Developmental Biology · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The plant vacuole is a central organelle that is involved in various biological processes throughout the plant life cycle. Elucidating the mechanism of vacuole biogenesis and maintenance is thus the basis for our understanding of these processes. Proper formation of the vacuole has been shown to depend on the intracellular membrane trafficking pathway. Although several mutants with altered vacuole morphology have been characterized in the past, the molecular basis for plant vacuole biogenesis has yet to be fully elucidated. With the aim to identify key factors that are essential for vacuole biogenesis, we performed a forward genetics screen in Arabidopsis (Arabidopsis thaliana) and isolated mutants with altered vacuole morphology. The vacuolar fusion defective1 (vfd1) mutant shows seedling lethality and defects in central vacuole formation. VFD1 encodes a Fab1, YOTB, Vac1, and EEA1 (FYVE) domain-containing protein, FYVE1, that has been implicated in intracellular trafficking. FYVE1 localizes on late endosomes and interacts with Src homology-3 domain-containing proteins. Mutants of FYVE1 are defective in ubiquitin-mediated protein degradation, vacuolar transport, and autophagy. Altogether, our results show that FYVE1 is essential for plant growth and development and place FYVE1 as a key regulator of intracellular trafficking and vacuole biogenesis.

Indexed as

ArabidopsisArabidopsis ProteinsAutophagyCytoplasmEndosomesGenes, ReporterModels, BiologicalMutationPhenotypeProtein TransportSaccharomyces cerevisiaeSeedlingsTwo-Hybrid System TechniquesUbiquitinated ProteinsVacuolesVesicular Transport ProteinsArabidopsis ProteinsFREE1 protein, ArabidopsisUbiquitinated ProteinsVesicular Transport Proteins

Identifiers

PMID25699591
PMCPMC4378156
OpenAlexW2130026540

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.