Evidence map›Paper›PMID 25699199›Full record

ArticlePeerJ2015

Diversity and ecological structure of vibrios in benthic and pelagic habitats along a latitudinal gradient in the Southwest Atlantic Ocean.

Luciane A Chimetto Tonon, Bruno Sergio de O Silva, Ana Paula B Moreira, Cecilia Valle, Nelson Alves, Giselle Cavalcanti, Gizele Garcia, Rubens M Lopes, Ronaldo B Francini-Filho, Rodrigo L de Moura and 2 more

Open access · goldAbstract read
In one paragraph

Article in PeerJ, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.4field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 24 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Luciane A Chimetto TononLaboratory of Microbiology, Institute of Biology, Federal University of Rio de Janeiro (UFRJ) , Rio de Janeiro , Brazil ; Brazilian Biosciences National Laboratory (LNBio), National Research Center Energy and Materials (CNPEM) , Campinas , Brazil.
Bruno Sergio de O SilvaLaboratory of Microbiology, Institute of Biology, Federal University of Rio de Janeiro (UFRJ) , Rio de Janeiro , Brazil.
Ana Paula B MoreiraLaboratory of Microbiology, Institute of Biology, Federal University of Rio de Janeiro (UFRJ) , Rio de Janeiro , Brazil.
Cecilia ValleLaboratory of Microbiology, Institute of Biology, Federal University of Rio de Janeiro (UFRJ) , Rio de Janeiro , Brazil.
Nelson AlvesLaboratory of Microbiology, Institute of Biology, Federal University of Rio de Janeiro (UFRJ) , Rio de Janeiro , Brazil.
Giselle CavalcantiLaboratory of Microbiology, Institute of Biology, Federal University of Rio de Janeiro (UFRJ) , Rio de Janeiro , Brazil.
Gizele GarciaLaboratory of Microbiology, Institute of Biology, Federal University of Rio de Janeiro (UFRJ) , Rio de Janeiro , Brazil.
Rubens M LopesInstitute of Oceanography, University of São Paulo (IO-USP) , São Paulo , Brazil.
Ronaldo B Francini-FilhoDepartment of Environment and Engineering, Federal University of Paraíba (UFPB) , Rio Tinto, PB , Brazil.
Rodrigo L de MouraLaboratory of Microbiology, Institute of Biology, Federal University of Rio de Janeiro (UFRJ) , Rio de Janeiro , Brazil.
Cristiane C ThompsonLaboratory of Microbiology, Institute of Biology, Federal University of Rio de Janeiro (UFRJ) , Rio de Janeiro , Brazil.
Fabiano L ThompsonLaboratory of Microbiology, Institute of Biology, Federal University of Rio de Janeiro (UFRJ) , Rio de Janeiro , Brazil.
Universidade Federal do Rio de Janeiro · BRUniversidade de São Paulo · BRUniversidade Federal da Paraíba · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We analyzed the diversity and population structure of the 775 Vibrio isolates from different locations of the southwestern Atlantic Ocean (SAO), including St. Peter and St. Paul Archipelago (SPSPA), Abrolhos Bank (AB) and the St. Sebastian region (SS), between 2005 and 2010. In this study, 195 novel isolates, obtained from seawater and major benthic organisms (rhodoliths and corals), were compared with a collection of 580 isolates previously characterized (available at www.taxvibrio.lncc.br). The isolates were distributed in 8 major habitat spectra according to AdaptML analysis on the basis of pyrH phylogenetic reconstruction and ecological information, such as isolation source (i.e., corals: Madracis decactis, Mussismilia braziliensis, M. hispida, Phyllogorgia dilatata, Scolymia wellsi; zoanthids: Palythoa caribaeorum, P. variabilis and Zoanthus solanderi; fireworm: Hermodice carunculata; rhodolith; water and sediment) and sampling site regions (SPSPA, AB and SS). Ecologically distinct groups were discerned through AdaptML, which finds phylogenetic groups that are significantly different in their spectra of habitat preferences. Some habitat spectra suggested ecological specialization, with habitat spectra 2, 3, and 4 corresponding to specialization on SPSPA, AB, and SS, respectively. This match between habitat and location may reflect a minor exchange of Vibrio populations between geographically isolated benthic systems. Moreover, we found several widespread Vibrio species predominantly from water column, and different populations of a single Vibrio species from H. carunculata in ecologically distinct groups (H-1 and H-8 respectively). On the other hand, AdaptML detected phylogenetic groups that are found in both the benthos and in open water. The ecological grouping observed suggests dispersal and connectivity between the benthic and pelagic systems in AB. This study is a first attempt to characterize the biogeographic distribution of vibrios in both seawater and several benthic hosts in the SAO. The benthopelagic coupling observed here stands out the importance of vibrios in the global ocean health.

Indexed as

AdaptMLBenthosCoralsHabitatsPlanktonRhodolithsVibrio

Identifiers

PMID25699199
PMCPMC4327252
OpenAlexW1976560971

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.