Evidence map›Paper›PMID 25698855›Full record

ArticleJournal of parasitic diseases : official organ of the Indian Society for Parasitology2015

Genetic characterization of Fasciola gigantica from different geographical regions of India by ribosomal DNA markers.

O K Raina, Siju Susan Jacob, M Sankar, D Bhattacharya, S Bandyopadyay, Anju Varghese, Jayanta Kumar Chamuah, H Lalrinkima

Open access · bronzeAbstract read
In one paragraph

Article in Journal of parasitic diseases : official organ of the Indian Society for Parasitology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.1field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Molecular Characterization ofInfection and drug resistance · 2023
    Article
  5. Identification and Genetic Characterization ofInfection and drug resistance · 2022
    Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

O K RainaDivision of Parasitology, Indian Veterinary Research Institute, Izatnagar, India.
Siju Susan JacobDivision of Parasitology, Indian Veterinary Research Institute, Izatnagar, India.
M SankarDivision of Parasitology, Indian Veterinary Research Institute, Izatnagar, India.
D BhattacharyaNational Research Centre on Yak, Dirang, Arunachal Pradesh India.
S BandyopadyayEastern Regional Station, Indian Veterinary Research Institute, Kolkata, India.
Anju VargheseDepartment of Veterinary Parasitology, Veterinary College, Navsari Agricultural University, Navsari, Gujarat India.
Jayanta Kumar ChamuahDivision of Parasitology, Indian Veterinary Research Institute, Izatnagar, India.
H LalrinkimaDivision of Parasitology, Indian Veterinary Research Institute, Izatnagar, India.
Indian Veterinary Research Institute · INNational Research Centre on Yak · INNavsari Agricultural University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ribosomal DNA sequences of the second internal transcribed spacer (ITS-2) and 28S ribosomal DNA (618 bp) of Fasciola gigantica collected from cattle and buffaloes from four different geographical locations of India, were characterized for genotyping. ITS-2 sequence was analyzed in 28 worms that was typical of F. gigantica and differed at six positions, with one of these being a distinguishing deletion (T) at the 327th position in F. gigantica relative to F. hepatica. However, Fasciola specimens also showed intraspecies sequence polymorphism in the ITS-2, with two different ITS-2 sequences existing in the ribosomal DNA (rDNA) array within a single Fasciola worm. One of the sequences was identical to that of F. gigantica and the other showed extensive sequence polymorphism in the ITS-2. Using BspH1-restriction fragment length polymorphism, six variable ITS-2 sequences in F. gigantica were identified within these parasite specimens and were found distributed in these four geographical regions. 28S rDNA sequence of 24 flukes, collected from the above four geographical regions, showed a single nucleotide polymorphism at 284th nucleotide (G/A). Analyzing the sequence data of 28S rDNA of F. gigantica available from some African and Asian countries for this polymorphic 284th nucleotide position, it is proposed that there are two basic lineages of the F. gigantica for 28S rDNA existing in the fluke populations from five African and several Asian countries.

Indexed as

28S ribosomal DNAFasciola giganticaGenetic characterizationITS-2

Identifiers

PMID25698855
PMCPMC4328017
OpenAlexW1991951925

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.