Evidence map›Paper›PMID 25697363›Full record

ArticleThe Journal of biological chemistry2015

Conformational changes leading to T7 DNA delivery upon interaction with the bacterial receptor.

Verónica A González-García, Mar Pulido-Cid, Carmela Garcia-Doval, Rebeca Bocanegra, Mark J van Raaij, Jaime Martín-Benito, Ana Cuervo, José L Carrascosa

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
4.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 82 citations in OpenAlex.

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  12. Viral Genome Delivery Across Bacterial Cell Surfaces.Annual review of microbiology · 2024
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  13. Review
  14. iScience · 2024
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  17. Resistance ofMicrobiology spectrum · 2023
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  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Verónica A González-GarcíaFrom the Structure of Macromolecules Department, Centro Nacional de Biotecnología (CSIC), Darwin 3, Cantoblanco, 28049 Madrid and.
Mar Pulido-CidFrom the Structure of Macromolecules Department, Centro Nacional de Biotecnología (CSIC), Darwin 3, Cantoblanco, 28049 Madrid and.
Carmela Garcia-DovalFrom the Structure of Macromolecules Department, Centro Nacional de Biotecnología (CSIC), Darwin 3, Cantoblanco, 28049 Madrid and.
Rebeca BocanegraFrom the Structure of Macromolecules Department, Centro Nacional de Biotecnología (CSIC), Darwin 3, Cantoblanco, 28049 Madrid and.
Mark J van RaaijFrom the Structure of Macromolecules Department, Centro Nacional de Biotecnología (CSIC), Darwin 3, Cantoblanco, 28049 Madrid and.
Jaime Martín-BenitoFrom the Structure of Macromolecules Department, Centro Nacional de Biotecnología (CSIC), Darwin 3, Cantoblanco, 28049 Madrid and.
Ana CuervoFrom the Structure of Macromolecules Department, Centro Nacional de Biotecnología (CSIC), Darwin 3, Cantoblanco, 28049 Madrid and acuervo@cnb.csic.es.
José L CarrascosaFrom the Structure of Macromolecules Department, Centro Nacional de Biotecnología (CSIC), Darwin 3, Cantoblanco, 28049 Madrid and Instituto Madrileño de Estudios Avanzados en Nanociencia (IMDEA Nanociencia), Cantoblanco, 28049 Madrid, Spain jlcarras@cnb.csic.es.
Consejo Superior de Investigaciones Científicas · ESCentro Nacional de Biotecnología · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The majority of bacteriophages protect their genetic material by packaging the nucleic acid in concentric layers to an almost crystalline concentration inside protein shells (capsid). This highly condensed genome also has to be efficiently injected into the host bacterium in a process named ejection. Most phages use a specialized complex (often a tail) to deliver the genome without disrupting cell integrity. Bacteriophage T7 belongs to the Podoviridae family and has a short, non-contractile tail formed by a tubular structure surrounded by fibers. Here we characterize the kinetics and structure of bacteriophage T7 DNA delivery process. We show that T7 recognizes lipopolysaccharides (LPS) from Escherichia coli rough strains through the fibers. Rough LPS acts as the main phage receptor and drives DNA ejection in vitro. The structural characterization of the phage tail after ejection using cryo-electron microscopy (cryo-EM) and single particle reconstruction methods revealed the major conformational changes needed for DNA delivery at low resolution. Interaction with the receptor causes fiber tilting and opening of the internal tail channel by untwisting the nozzle domain, allowing release of DNA and probably of the internal head proteins.

Indexed as

Genome, ViralBacteriophage T7DNA PackagingDNA, ViralEscherichia coliKineticsLipopolysaccharidesMicrobial InteractionsModels, MolecularNucleic Acid ConformationReceptors, VirusTransduction, GeneticVirionDNA, ViralLipopolysaccharidesReceptors, VirusBacteriophageDNA VirusesElectron Microscopy (EM)Protein ComplexVirus EntryVirus Structure

Identifiers

PMID25697363
PMCPMC4400320
OpenAlexW1967257060

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.