Evidence map›Paper›PMID 25697358›Full record

ArticleThe Journal of biological chemistry2015

Structural and enzymatic analysis of TarM glycosyltransferase from Staphylococcus aureus reveals an oligomeric protein specific for the glycosylation of wall teichoic acid.

Cengiz Koç, David Gerlach, Sebastian Beck, Andreas Peschel, Guoqing Xia, Thilo Stehle

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 24 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. InvasiveScience advances · 2023
    Article
  5. Genetic diversity ofMicrobial genomics · 2022
    Article
  6. Article
  7. Review
  8. Impact of Glycan Linkage toACS infectious diseases · 2021
    Article
  9. Nucleotide Sugars in Chemistry and Biology.Molecules (Basel, Switzerland) · 2020
    Review
  10. Article
  11. Article
  12. Mechanism of a cytosolic O-glycosyltransferase essential for the synthesis of a bacterial adhesion protein.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 3 countries.

Cengiz KoçFrom the Interfaculty Institute of Biochemistry, University of Tübingen, 72076 Tübingen, Germany.
David GerlachInterfaculty Institute of Microbiology and Infection Medicine, Cellular and Molecular Microbiology Section, University of Tübingen, 72076 Tübingen, Germany.
Sebastian BeckInterfaculty Institute of Microbiology and Infection Medicine, Cellular and Molecular Microbiology Section, University of Tübingen, 72076 Tübingen, Germany.
Andreas PeschelInterfaculty Institute of Microbiology and Infection Medicine, Cellular and Molecular Microbiology Section, University of Tübingen, 72076 Tübingen, Germany, German Center for Infection Research (DZIF), Partner site Tübingen, 72076 Tübingen, Germany.
Guoqing XiaInterfaculty Institute of Microbiology and Infection Medicine, Cellular and Molecular Microbiology Section, University of Tübingen, 72076 Tübingen, Germany, Faculty of Medical and Human Sciences, Stopford Building, Institute of Inflammation and Repair, The University of Manchester, Oxford Road, Manchester, M13 9PT, United Kingdom, and guoqing.xia@manchester.ac.uk.
Thilo StehleFrom the Interfaculty Institute of Biochemistry, University of Tübingen, 72076 Tübingen, Germany, German Center for Infection Research (DZIF), Partner site Tübingen, 72076 Tübingen, Germany, Department of Pediatrics, Vanderbilt University School of Medicine, Nashville, Tennesse 37232 thilo.stehle@uni-tuebingen.de.
University of Tübingen · DEGerman Center for Infection Research · DEUniversity of Manchester · GBVanderbilt University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Anionic glycopolymers known as wall teichoic acids (WTAs) functionalize the peptidoglycan layers of many Gram-positive bacteria. WTAs play central roles in many fundamental aspects of bacterial physiology, and they are important determinants of pathogenesis and antibiotic resistance. A number of enzymes that glycosylate WTA in Staphylococcus aureus have recently been identified. Among these is the glycosyltransferase TarM, a component of the WTA de novo biosynthesis pathway. TarM performs the synthesis of α-O-N-acetylglycosylated poly-5'-phosphoribitol in the WTA structure. We have solved the crystal structure of TarM at 2.4 Å resolution, and we have also determined a structure of the enzyme in complex with its substrate UDP-GlcNAc at 2.8 Å resolution. The protein assembles into a propeller-like homotrimer in which each blade contains a GT-B-type glycosyltransferase domain with a typical Rossmann fold. The enzymatic reaction retains the stereochemistry of the anomeric center of the transferred GlcNAc-moiety on the polyribitol backbone. TarM assembles into a trimer using a novel trimerization domain, here termed the HUB domain. Structure-guided mutagenesis experiments of TarM identify residues critical for enzyme activity, assign a putative role for the HUB in TarM function, and allow us to propose a likely reaction mechanism.

Indexed as

Bacterial ProteinsBinding SitesCatalytic DomainCell WallCircular DichroismCrystallography, X-RayGlycosylationGlycosyltransferasesModels, MolecularMutationProtein MultimerizationProtein Structure, TertiaryStaphylococcus aureusTeichoic AcidsBacterial ProteinsGlycosyltransferasesTeichoic AcidsBiosynthesisGlycosyltransferaseMethicillin-resistant Staphylococcus aureus (MRSA)PeptidoglycanProtein StructureTeichoic AcidWall Teichoic Acid (WTA) Biosynthesis

Identifiers

PMID25697358
PMCPMC4392284
OpenAlexW2154425516

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.