Evidence map›Paper›PMID 25697095›Full record

ArticleThe Biochemical journal2015

Proline dehydrogenase 2 (PRODH2) is a hydroxyproline dehydrogenase (HYPDH) and molecular target for treating primary hyperoxaluria.

Candice B Summitt, Lynnette C Johnson, Thomas J Jönsson, Derek Parsonage, Ross P Holmes, W Todd Lowther

Open access · greenAbstract read
In one paragraph

Article in The Biochemical journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 60 citations in OpenAlex.

  1. Article
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  5. Metabolic reprogramming in bone metastasis of human cancers.Frontiers in cell and developmental biology · 2025
    Review
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  7. Article
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  9. Article
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  11. Article
  12. Article
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  14. Synthesis of glycine from 4-hydroxyproline in tissues of neonatal pigs.Experimental biology and medicine (Maywood, N.J.) · 2023
    Article
  15. Article
  16. Article
  17. Review
  18. CoQNutrients · 2022
    Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Candice B Summitt*Center for Structural Biology and Department of Biochemistry, Wake Forest School of Medicine, Winston-Salem, NC 27101, U.S.A.
Lynnette C Johnson*Center for Structural Biology and Department of Biochemistry, Wake Forest School of Medicine, Winston-Salem, NC 27101, U.S.A.
Thomas J Jönsson*Center for Structural Biology and Department of Biochemistry, Wake Forest School of Medicine, Winston-Salem, NC 27101, U.S.A.
Derek Parsonage*Center for Structural Biology and Department of Biochemistry, Wake Forest School of Medicine, Winston-Salem, NC 27101, U.S.A.
Ross P Holmes†Department of Urology, University of Alabama at Birmingham, Birmingham, AL 35294, U.S.A.
W Todd Lowther*Center for Structural Biology and Department of Biochemistry, Wake Forest School of Medicine, Winston-Salem, NC 27101, U.S.A.
Wake Forest University · USUniversity of Alabama at Birmingham · US

Funding

Tumor Tissue CoreP30CA012197 · NCI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI Ruben A. Mesa · 1985 to 2026
$55.4M
Mitochondrial Metabolism in Primary HyperoxaluriaR01DK054468 · NIDDK · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI HOLMES, ROSS P · 1999 to 2017
$4.1M
Endogenous Oxalate SynthesisR01DK073732 · NIDDK · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI HOLMES, ROSS P · 2006 to 2014
$2.4M
Hydroxproline Catabolism and HyperoxaluriaR01DK083527 · NIDDK · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI HOLMES, ROSS P, LOWTHER, W TODD · 2010 to 2012
$753k
NCI NIH HHS P30 CA012197NCI NIH HHS P30CA012197NIDDK NIH HHS DK054468NIDDK NIH HHS DK073732NIDDK NIH HHS DK083527NIDDK NIH HHS R01 DK054468NIDDK NIH HHS R01 DK073732NIDDK NIH HHS R01 DK083527
6 · The paper itself

Abstract

The primary hyperoxalurias (PH), types 1-3, are disorders of glyoxylate metabolism that result in increased oxalate production and calcium oxalate stone formation. The breakdown of trans-4-hydroxy-L-proline (Hyp) from endogenous and dietary sources of collagen makes a significant contribution to the cellular glyoxylate pool. Proline dehydrogenase 2 (PRODH2), historically known as hydroxyproline oxidase, is the first step in the hydroxyproline catabolic pathway and represents a drug target to reduce the glyoxylate and oxalate burden of PH patients. This study is the first report of the expression, purification, and biochemical characterization of human PRODH2. Evaluation of a panel of N-terminal and C-terminal truncation variants indicated that residues 157-515 contain the catalytic core with one FAD molecule. The 12-fold higher k(cat)/K(m) value of 0.93 M⁻¹·s⁻¹ for Hyp over Pro demonstrates the preference for Hyp as substrate. Moreover, an anaerobic titration determined a K(d) value of 125 μM for Hyp, a value ~1600-fold lower than the K(m) value. A survey of ubiquinone analogues revealed that menadione, duroquinone, and CoQ₁ reacted more efficiently than oxygen as the terminal electron acceptor during catalysis. Taken together, these data and the slow reactivity with sodium sulfite support that PRODH2 functions as a dehydrogenase and most likely utilizes CoQ₁₀ as the terminal electron acceptor in vivo. Thus, we propose that the name of PRODH2 be changed to hydroxyproline dehydrogenase (HYPDH). Three Hyp analogues were also identified to inhibit the activity of HYPDH, representing the first steps toward the development of a novel approach to treat all forms of PH.

Indexed as

Models, MolecularBiocatalysisCatalytic DomainEnzyme InhibitorsFlavin-Adenine DinucleotideFlavoproteinsFuransHumansHydroxyprolineHyperoxaluria, PrimaryLigandsMutant ProteinsPeptide FragmentsProlineProline OxidaseProtein Conformationcoenzyme Q10Enzyme InhibitorsFlavin-Adenine DinucleotideFlavoproteinsFuransHydroxyprolineLigandsMutant ProteinsPeptide FragmentsProlineproline dehydrogenase (oxidase) 2Proline OxidaseRecombinant Proteinstetrahydro-2-furancarboxylic acidUbiquinone

Identifiers

PMID25697095
PMCPMC4377293
OpenAlexW2328397885

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.