Evidence map›Paper›PMID 25696920›Full record

ArticleBlood2015

Functions of BET proteins in erythroid gene expression.

Aaron J Stonestrom, Sarah C Hsu, Kristen S Jahn, Peng Huang, Cheryl A Keller, Belinda M Giardine, Stephan Kadauke, Amy E Campbell, Perry Evans, Ross C Hardison and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Blood, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 107 citations in OpenAlex.

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  16. Report of the First International Symposium on NUT Carcinoma.Clinical cancer research : an official journal of the American Association for Cancer Research · 2022
    Article
  17. Article
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4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Aaron J StonestromDivision of Hematology, Children's Hospital of Philadelphia, Philadelphia, PA; Perelman School of Medicine, University of Pennsylvania, Philadelphia PA; and.
Sarah C HsuDivision of Hematology, Children's Hospital of Philadelphia, Philadelphia, PA; Perelman School of Medicine, University of Pennsylvania, Philadelphia PA; and.
Kristen S JahnDivision of Hematology, Children's Hospital of Philadelphia, Philadelphia, PA;
Peng HuangDivision of Hematology, Children's Hospital of Philadelphia, Philadelphia, PA;
Cheryl A KellerDepartment of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA.
Belinda M GiardineDepartment of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA.
Stephan KadaukeDivision of Hematology, Children's Hospital of Philadelphia, Philadelphia, PA; Perelman School of Medicine, University of Pennsylvania, Philadelphia PA; and.
Amy E CampbellDivision of Hematology, Children's Hospital of Philadelphia, Philadelphia, PA; Perelman School of Medicine, University of Pennsylvania, Philadelphia PA; and.
Perry EvansDivision of Hematology, Children's Hospital of Philadelphia, Philadelphia, PA;
Ross C HardisonDepartment of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA.
Gerd A BlobelDivision of Hematology, Children's Hospital of Philadelphia, Philadelphia, PA; Perelman School of Medicine, University of Pennsylvania, Philadelphia PA; and.
Children's Hospital of Philadelphia · USPennsylvania State University · USUniversity of Pennsylvania · US

Funding

Transcriptional Networks Controlling Erythroid DifferentiationR01DK054937 · NIDDK · CHILDREN'S HOSP OF PHILADELPHIA · PI Gerd A Blobel · 1999 to 2026
$12.8M
HEMATOPOIESIS TRAINING GRANTT32DK007780 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI TONG, WEI · 1999 to 2023
$6.7M
Global Predictions and Tests of Erythroid RegulationR01DK065806 · NIDDK · PENNSYLVANIA STATE UNIVERSITY-UNIV PARK · PI BLOBEL, GERD A, CHIAROMONTE, FRANCESCA · 2004 to 2013
$5.3M
Enhance human ENCODE by function comparisons to mouseRC2HG005573 · NHGRI · PENNSYLVANIA STATE UNIVERSITY, THE · PI HARDISON, ROSS C · 2009 to 2011
$2.2M
Global Predictions and Tests of Hematopoietic RegulationR56DK065806 · NIDDK · PENNSYLVANIA STATE UNIVERSITY, THE · PI BLOBEL, GERD A, BODINE, DAVID M. · 2014 to 2014
$224k
Role of MLL1 and MLL1 leukemogenic fusions in maintaining transcriptional memoryF30CA189553 · NCI · UNIVERSITY OF PENNSYLVANIA · PI HSU, SARAH CHING-LAN · 2014 to 2016
$107k
NCI NIH HHS F30 CA189553NCI NIH HHS F30-CA189553NIDDK NIH HHS R01 DK054937NIDDK NIH HHS R01-DK054937NIDDK NIH HHS R56 DK065806NIDDK NIH HHS R56-DK065806NIDDK NIH HHS T32 DK007780NIDDK NIH HHS T32-DK007780
6 · The paper itself

Abstract

Inhibitors of bromodomain and extraterminal motif proteins (BETs) are being evaluated for the treatment of cancer and other diseases, yet much remains to be learned about how BET proteins function during normal physiology. We used genomic and genetic approaches to examine BET function in a hematopoietic maturation system driven by GATA1, an acetylated transcription factor previously shown to interact with BETs. We found that BRD2, BRD3, and BRD4 were variably recruited to GATA1-regulated genes, with BRD3 binding the greatest number of GATA1-occupied sites. Pharmacologic BET inhibition impaired GATA1-mediated transcriptional activation, but not repression, genome-wide. Mechanistically, BETs promoted chromatin occupancy of GATA1 and subsequently supported transcriptional activation. Using a combination of CRISPR-Cas9-mediated genomic engineering and shRNA approaches, we observed that depletion of either BRD2 or BRD4 alone blunted erythroid gene activation. Surprisingly, depletion of BRD3 only affected erythroid transcription in the context of BRD2 deficiency. Consistent with functional overlap among BET proteins, forced BRD3 expression substantially rescued defects caused by BRD2 deficiency. These results suggest that pharmacologic BET inhibition should be interpreted in the context of distinct steps in transcriptional activation and overlapping functions among BET family members.

Indexed as

Gene Expression RegulationAnimalsCells, CulturedErythroid CellsGATA1 Transcription FactorGene Knockdown TechniquesHematopoiesisHumansMiceProtein Serine-Threonine KinasesProtein Structure, TertiaryRNA-Binding ProteinsGATA1 Transcription FactorProtein Serine-Threonine KinasesRNA-Binding Proteins

Identifiers

PMID25696920
PMCPMC4424630
OpenAlexW2044082037

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.