Evidence map›Paper›PMID 25695634›Full record

ArticlePLoS neglected tropical diseases2015

Genetic diversity and population structure of Trypanosoma brucei in Uganda: implications for the epidemiology of sleeping sickness and Nagana.

Richard Echodu, Mark Sistrom, Rosemary Bateta, Grace Murilla, Loyce Okedi, Serap Aksoy, Chineme Enyioha, John Enyaru, Elizabeth Opiyo, Wendy Gibson and 1 more

Abstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. Infection withJournal of parasitic diseases : official organ of the Indian Society for Parasitology · 2022
    Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Frontiers in microbiology · 2021
    Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Wild chimpanzees are infected by Trypanosoma brucei.International journal for parasitology. Parasites and wildlife · 2015
    Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Richard EchoduFaculty of Science, Gulu University, Gulu, Uganda.
Mark SistromDepartment of Ecology and Evolutionary Biology, Yale University, New Haven, Connecticut, United States of America.
Rosemary BatetaTrypanosomiasis Research Centre, Kenya Agricultural Research Institute, Kikuyu, Kenya.
Grace MurillaTrypanosomiasis Research Centre, Kenya Agricultural Research Institute, Kikuyu, Kenya.
Loyce OkediNational Agricultural Research Organisation, National Livestock Resources Research Institute, Tororo, Uganda.
Serap AksoyDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America.
Chineme EnyiohaDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America.
John EnyaruSchool of Biological Sciences, Makerere University, Kampala, Uganda.
Elizabeth OpiyoFaculty of Science, Gulu University, Gulu, Uganda.
Wendy GibsonSchool of Biological Sciences, University of Bristol, Bristol, United Kingdom.
Adalgisa CacconeDepartment of Ecology and Evolutionary Biology, Yale University, New Haven, Connecticut, United States of America; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America.

Funding

Evolutionary Genetics of Tsetse and Its SymbiontsR01AI068932 · NIAID · YALE UNIVERSITY · PI AKSOY, SERAP, CACCONE, ADALGISA · 2008 to 2018
$7.0M
Tsetse Transmitted African TrypanosomiasisD43TW007391 · FIC · YALE UNIVERSITY · PI AKSOY, SERAP · 2008 to 2017
$1.8M
Next generation sequencing of East African trypanosomes to expand the molecular eR21AI094615 · NIAID · YALE UNIVERSITY · PI AKSOY, SERAP, CACCONE, ADALGISA · 2011 to 2012
$459k
Evidence based control strategies of Sleeping Sickness vectorsR03TW008413 · FIC · YALE UNIVERSITY · PI AKSOY, SERAP · 2010 to 2012
$175k
FIC NIH HHS D43 TW007391FIC NIH HHS R03 TW008413NIAID NIH HHS AI094615-01NIAID NIH HHS R01 AI068932NIAID NIH HHS R21 AI094615
6 · The paper itself

Abstract

backgroundWhile Human African Trypanosomiasis (HAT) is in decline on the continent of Africa, the disease still remains a major health problem in Uganda. There are recurrent sporadic outbreaks in the traditionally endemic areas in south-east Uganda, and continued spread to new unaffected areas in central Uganda. We evaluated the evolutionary dynamics underpinning the origin of new foci and the impact of host species on parasite genetic diversity in Uganda. We genotyped 269 Trypanosoma brucei isolates collected from different regions in Uganda and southwestern Kenya at 17 microsatellite loci, and checked for the presence of the SRA gene that confers human infectivity to T. b. rhodesiense.

resultsBoth Bayesian clustering methods and Discriminant Analysis of Principal Components partition Trypanosoma brucei isolates obtained from Uganda and southwestern Kenya into three distinct genetic clusters. Clusters 1 and 3 include isolates from central and southern Uganda, while cluster 2 contains mostly isolates from southwestern Kenya. These three clusters are not sorted by subspecies designation (T. b. brucei vs T. b. rhodesiense), host or date of collection. The analyses also show evidence of genetic admixture among the three genetic clusters and long-range dispersal, suggesting recent and possibly on-going gene flow between them.

conclusionsOur results show that the expansion of the disease to the new foci in central Uganda occurred from the northward spread of T. b. rhodesiense (Tbr). They also confirm the emergence of the human infective strains (Tbr) from non-infective T. b. brucei (Tbb) strains of different genetic backgrounds, and the importance of cattle as Tbr reservoir, as confounders that shape the epidemiology of sleeping sickness in the region.

Indexed as

AnimalsBayes TheoremCattleDisease OutbreaksDNA, ProtozoanGenetic VariationGenotypeHumansKenyaMicrosatellite RepeatsPolymerase Chain ReactionTrypanosoma brucei bruceiTrypanosoma brucei rhodesienseTrypanosomiasis, AfricanUgandaDNA, Protozoan

Identifiers

PMID25695634
PMCPMC4335064

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.