Evidence map›Paper›PMID 25695131›Full record

ArticleEpigenetics2015

Mycoplasma CG- and GATC-specific DNA methyltransferases selectively and efficiently methylate the host genome and alter the epigenetic landscape in human cells.

Andrei V Chernov, Leticia Reyes, Zhenkang Xu, Beatriz Gonzalez, Georgiy Golovko, Scott Peterson, Manuel Perucho, Yuriy Fofanov, Alex Y Strongin

Open access · bronzeAbstract read
In one paragraph

Article in Epigenetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 43 citations in OpenAlex.

  1. Review
  2. Article
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  6. Identification of potential nucleomodulins ofFrontiers in microbiology · 2024
    Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Impacts ofMicrobial genomics · 2022
    Article
  12. Review
  13. Review
  14. Article
  15. Review
  16. Review
  17. Review
  18. Host Epigenetics in Intracellular Pathogen Infections.International journal of molecular sciences · 2020
    Review
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 2 countries.

Andrei V Chernova Infectious & Inflammatory Disease Center ; Sanford-Burnham Medical Research Institute ; La Jolla , CA USA.
Leticia Reyes
Zhenkang Xu
Beatriz Gonzalez
Georgiy Golovko
Scott Peterson
Manuel Perucho
Yuriy Fofanov
Alex Y Strongin
The University of Texas Medical Branch at Galveston · USLa Jolla Alcohol Research · USCancer Genetics (United States) · USInstitute of Predictive and Personalized Medicine of Cancer · ESSanford Burnham Prebys Medical Discovery Institute · USUniversity of Florida · US

Funding

METALLOPROTEINASES IN TUMOR NEOVASCULARIZATIONR01CA083017 · NCI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI STRONGIN, ALEX Y · 1999 to 2014
$3.8M
MT1-MMP pericellular proteolysis in malignancyR01CA077470 · NCI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI STRONGIN, ALEX Y · 1999 to 2009
$3.1M
Biochemistry of MT1-MMP activation in malignancyR01CA157328 · NCI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI STRONGIN, ALEX Y · 2011 to 2015
$1.9M
NCI NIH HHS CA077470NCI NIH HHS CA083017NCI NIH HHS CA157328
6 · The paper itself

Abstract

Aberrant DNA methylation is frequently observed in disease, including many cancer types, yet the underlying mechanisms remain unclear. Because germline and somatic mutations in the genes that are responsible for DNA methylation are infrequent in malignancies, additional mechanisms must be considered. Mycoplasmas spp., including Mycoplasma hyorhinis, efficiently colonize human cells and may serve as a vehicle for delivery of enzymatically active microbial proteins into the intracellular milieu. Here, we performed, for the first time, genome-wide and individual gene mapping of methylation marks generated by the M. hyorhinis CG- and GATC-specific DNA cytosine methyltransferases (MTases) in human cells. Our results demonstrated that, upon expression in human cells, MTases readily translocated to the cell nucleus. In the nucleus, MTases selectively and efficiently methylated the host genome at the DNA sequence sites free from pre-existing endogenous methylation, including those in a variety of cancer-associated genes. We also established that mycoplasma is widespread in colorectal cancers, suggesting that either the infection contributed to malignancy onset or, alternatively, that tumors provide a favorable environment for mycoplasma growth. In the human genome, ∼ 11% of GATC sites overlap with CGs (e.g., CGAT(m)CG); therefore, the methylated status of these sites can be perpetuated by human DNMT1. Based on these results, we now suggest that the GATC-specific methylation represents a novel type of infection-specific epigenetic mark that originates in human cells with a previous exposure to infection. Overall, our findings unveil an entirely new panorama of interactions between the human microbiome and epigenome with a potential impact in disease etiology.

Indexed as

Epigenesis, GeneticGenome, HumanAmino Acid SequenceCell Line, TumorCell NucleusCell ProliferationCloning, MolecularColorectal NeoplasmsCpG IslandsDNA Modification MethylasesGenetic MarkersHost-Pathogen InteractionsHumansMethylationMolecular Sequence DataMycoplasma hyorhinisDNA Modification MethylasesGenetic Markers5mC5-methylcytosine; CPGIcolorectal cancerCpG island; MTaseDNA methylationDNA methyltransferasesepigeneticshost-pathogen interactionsmycoplasmaMycoplasma hyorhinis DNA cytosine methyltransferase.

Identifiers

PMID25695131
PMCPMC4623497
OpenAlexW1762566355

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.