Evidence map›Paper›PMID 25694543›Full record

ArticleJournal of the Royal Society, Interface2015

Sources of variability in cytosolic calcium transients triggered by stimulation of homogeneous uro-epithelial cell monolayers.

Peter A Appleby, Saqib Shabir, Jennifer Southgate, Dawn Walker

Abstract read
In one paragraph

Article in Journal of the Royal Society, Interface, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Peter A ApplebyDepartment of Computer Science/INSIGNEO Institute for In Silico Medicine, University of Sheffield, Sheffield, UK.
Saqib ShabirJack Birch Unit for Molecular Carcinogenesis, Department of Biology, University of York, York, UK.
Jennifer SouthgateJack Birch Unit for Molecular Carcinogenesis, Department of Biology, University of York, York, UK.
Dawn WalkerDepartment of Computer Science/INSIGNEO Institute for In Silico Medicine, University of Sheffield, Sheffield, UK d.c.walker@sheffield.ac.uk.

Funding

Wellcome Trust 090577/Z/09/Z
6 · The paper itself

Abstract

Epithelial tissue structure is the emergent outcome of the interactions between large numbers of individual cells. Experimental cell biology offers an important tool to unravel these complex interactions, but current methods of analysis tend to be limited to mean field approaches or representation by selected subsets of cells. This may result in bias towards cells that respond in a particular way and/or neglect local, context-specific cell responses. Here, an automated algorithm was applied to examine in detail the individual calcium transients evoked in genetically homogeneous, but asynchronous populations of cultured non-immortalized normal human urothelial cells when subjected to either the global application of an external agonist or a localized scratch wound. The recorded calcium transients were classified automatically according to a set of defined metrics and distinct sub-populations of cells that responded in qualitatively different ways were observed. The nature of this variability in the homogeneous cell population was apportioned to two sources: intrinsic variation in individual cell responses and extrinsic variability due to context-specific factors of the environment, such as spatial heterogeneity. Statistically significant variation in the features of the calcium transients evoked by scratch wounding according to proximity to the wound edge was identified. The manifestation of distinct sub-populations of cells is considered central to the coordination of population-level response resulting in wound closure.

Indexed as

CalciumCalcium SignalingCells, CulturedCytosolEpithelial CellsFluorescent Antibody TechniqueHumansUrotheliumWound HealingCalciumautomated image analysiscalcium signallingepitheliumheterogeneityurotheliumwound repair

Identifiers

PMID25694543
PMCPMC4387530

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.