Evidence map›Paper›PMID 25694529›Full record

ArticleJournal of clinical microbiology2015

Comparative evaluation of three commercial quantitative cytomegalovirus standards by use of digital and real-time PCR.

R T Hayden, Z Gu, S S Sam, Y Sun, L Tang, S Pounds, A M Caliendo

Abstract read
In one paragraph

Article in Journal of clinical microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Applications of Digital PCR for Clinical Microbiology.Journal of clinical microbiology · 2017
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

R T HaydenDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA randall.hayden@stjude.org.
Z GuDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
S S SamMiriam Hospital, Providence, Rhode Island, USA.
Y SunDepartment of Biostatistics, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
L TangDepartment of Biostatistics, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
S PoundsDepartment of Biostatistics, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
A M CaliendoDepartment of Medicine, Alpert Medical School of Brown University, Providence, Rhode Island, USA.

Funding

Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
Translational ScienceP30AI042853 · NIAID · MIRIAM HOSPITAL · PI LARRY K BROWN · 1998 to 2026
$51.7M
NCI NIH HHS P30 CA021765NIAID NIH HHS P30 AI042853NIAID NIH HHS P30AI042853
6 · The paper itself

Abstract

The recent development of the 1st WHO International Standard for human cytomegalovirus (CMV) and the introduction of commercially produced secondary standards have raised hopes of improved agreement among laboratories performing quantitative PCR for CMV. However, data to evaluate the trueness and uniformity of secondary standards and the consistency of results achieved when these materials are run on various assays are lacking. Three concentrations of each of the three commercially prepared secondary CMV standards were tested in quadruplicate by three real-time and two digital PCR methods. The mean results were compared in a pairwise fashion with nominal values provided by each manufacturer. The agreement of results among all methods for each sample and for like concentrations of each standard was also assessed. The relationship between the nominal values of standards and the measured values varied, depending upon the assay used and the manufacturer of the standards, with the degree of bias ranging from +0.6 to -1.0 log10 IU/ml. The mean digital PCR result differed significantly among the secondary standards, as did the results of the real-time PCRs, particularly when plotted against nominal log10 IU values. Commercially available quantitative secondary CMV standards produce variable results when tested by different real-time and digital PCR assays, with various magnitudes of bias compared to nominal values. These findings suggest that the use of such materials may not achieve the intended uniformity among laboratories measuring CMV viral load, as envisioned by adaptation of the WHO standard.

Indexed as

Reference StandardsCytomegalovirusCytomegalovirus InfectionsHumansMolecular Diagnostic TechniquesReal-Time Polymerase Chain ReactionViral Load

Identifiers

PMID25694529
PMCPMC4400765

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.