Evidence map›Paper›PMID 25694426›Full record

ArticleThe Journal of biological chemistry2015

Peroxisomal Pex3 activates selective autophagy of peroxisomes via interaction with the pexophagy receptor Atg30.

Sarah F Burnett, Jean-Claude Farré, Taras Y Nazarko, Suresh Subramani

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed, 1 pooled it
5.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 1 synthesis or guideline pooled it, 51 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. The peroxisome: an update on mysteries 3.0.Histochemistry and cell biology · 2024
    Review
  10. Article
  11. Review
  12. Review
  13. Article
  14. Review
  15. Pexophagy: A Model for Selective Autophagy.International journal of molecular sciences · 2020
    Review
  16. Transcriptomic Analysis ofFrontiers in microbiology · 2020
    Article
  17. Article
  18. Article
  19. Pexophagy in yeast and mammals: an update on mysteries.Histochemistry and cell biology · 2018
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Sarah F BurnettFrom the Section of Molecular Biology, Division of Biological Sciences, University of California, San Diego, La Jolla, California 92093-0322.
Jean-Claude FarréFrom the Section of Molecular Biology, Division of Biological Sciences, University of California, San Diego, La Jolla, California 92093-0322.
Taras Y NazarkoFrom the Section of Molecular Biology, Division of Biological Sciences, University of California, San Diego, La Jolla, California 92093-0322.
Suresh SubramaniFrom the Section of Molecular Biology, Division of Biological Sciences, University of California, San Diego, La Jolla, California 92093-0322 ssubramani@ucsd.edu.
University of California, San Diego · US

Funding

Mechanisms Involved in PexophagyR01GM069373 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SUBRAMANI, SURESH · 2006 to 2013
$2.3M
The role of acyl-CoA binding proteins in selective autophagyK01DK094843 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI NAZARKO, TARAS Y. · 2012 to 2014
$348k
NIDDK NIH HHS K01 DK094843NIDDK NIH HHS K01DK094843NIGMS NIH HHS GM069373NIGMS NIH HHS R01 GM069373
6 · The paper itself

Abstract

Pexophagy is a process that selectively degrades peroxisomes by autophagy. The Pichia pastoris pexophagy receptor Atg30 is recruited to peroxisomes under peroxisome proliferation conditions. During pexophagy, Atg30 undergoes phosphorylation, a prerequisite for its interactions with the autophagy scaffold protein Atg11 and the ubiquitin-like protein Atg8. Atg30 is subsequently shuttled to the vacuole along with the targeted peroxisome for degradation. Here, we defined the binding site for Atg30 on the peroxisomal membrane protein Pex3 and uncovered a role for Pex3 in the activation of Atg30 via phosphorylation and in the recruitment of Atg11 to the receptor protein complex. Pex3 is classically a docking protein for other proteins that affect peroxisome biogenesis, division, and segregation. We conclude that Pex3 has a role beyond simple docking of Atg30 and that its interaction with Atg30 regulates pexophagy in the yeast P. pastoris.

Indexed as

AutophagyFungal ProteinsMembrane ProteinsPeroxisomesPichiaProtein Interaction Domains and MotifsProtein TransportFungal ProteinsMembrane ProteinsAutophagyMembrane TraffickingPeroxisomePexophagyProtein-Protein InteractionReceptor RegulationSignaling

Identifiers

PMID25694426
PMCPMC4375511
OpenAlexW1964775549

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.