Evidence map›Paper›PMID 25693801›Full record

ArticleMolecular & cellular proteomics : MCP2015

Protein Methionine Sulfoxide Dynamics in Arabidopsis thaliana under Oxidative Stress.

Silke Jacques, Bart Ghesquière, Pieter-Jan De Bock, Hans Demol, Khadija Wahni, Patrick Willems, Joris Messens, Frank Van Breusegem, Kris Gevaert

Open access · hybridAbstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed, 1 pooled it
5.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 1 synthesis or guideline pooled it, 100 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Enrichment-free deep proteomics enables proteome-scale analysis of methionine oxidation.DNA research : an international journal for rapid publication of reports on genes and genomes · 2026
    Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Ribosome Assembly and Repair.Annual review of cell and developmental biology · 2024
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Hydrogen peroxide-induced stress acclimation in plants.Cellular and molecular life sciences : CMLS · 2022
    Review
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Silke JacquesFrom the Department of Medical Protein Research, VIB, B-9000 Ghent, Belgium, Department of Biochemistry, Ghent University, B-9000 Ghent, Belgium, Department of Plant Systems Biology, VIB, Technologiepark 927, B-9052 Ghent, Belgium, Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 927, B-9052 Ghent, Belgium.
Bart GhesquièreFrom the Department of Medical Protein Research, VIB, B-9000 Ghent, Belgium, Department of Biochemistry, Ghent University, B-9000 Ghent, Belgium.
Pieter-Jan De BockFrom the Department of Medical Protein Research, VIB, B-9000 Ghent, Belgium, Department of Biochemistry, Ghent University, B-9000 Ghent, Belgium.
Hans DemolFrom the Department of Medical Protein Research, VIB, B-9000 Ghent, Belgium, Department of Biochemistry, Ghent University, B-9000 Ghent, Belgium.
Khadija WahniVIB Structural Biology Research Center, Vrije Universiteit Brussel (VUB), B-1050 Brussels, Belgium, Brussels Center for Redox Biology, B-1050 Brussels, Belgium, Structural Biology Brussels, Vrije Universiteit Brussel, B-1050 Brussels, Belgium.
Patrick WillemsFrom the Department of Medical Protein Research, VIB, B-9000 Ghent, Belgium, Department of Biochemistry, Ghent University, B-9000 Ghent, Belgium, Department of Plant Systems Biology, VIB, Technologiepark 927, B-9052 Ghent, Belgium, Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 927, B-9052 Ghent, Belgium.
Joris MessensVIB Structural Biology Research Center, Vrije Universiteit Brussel (VUB), B-1050 Brussels, Belgium, Brussels Center for Redox Biology, B-1050 Brussels, Belgium, Structural Biology Brussels, Vrije Universiteit Brussel, B-1050 Brussels, Belgium.
Frank Van BreusegemDepartment of Plant Systems Biology, VIB, Technologiepark 927, B-9052 Ghent, Belgium, Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 927, B-9052 Ghent, Belgium, frank.vanbreusegem@psb.ugent.be.
Kris GevaertFrom the Department of Medical Protein Research, VIB, B-9000 Ghent, Belgium, Department of Biochemistry, Ghent University, B-9000 Ghent, Belgium, kris.gevaert@vib-ugent.be.
Ghent University · BEVIB-VUB Center for Structural Biology · BEVIB-UGent Center for Medical Biotechnology · BEVIB-UGent Center for Plant Systems Biology · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Reactive oxygen species such as hydrogen peroxide can modify proteins via direct oxidation of their sulfur-containing amino acids, cysteine and methionine. Methionine oxidation, studied here, is a reversible posttranslational modification that is emerging as a mechanism by which proteins perceive oxidative stress and function in redox signaling. Identification of proteins with oxidized methionines is the first prerequisite toward understanding the functional effect of methionine oxidation on proteins and the biological processes in which they are involved. Here, we describe a proteome-wide study of in vivo protein-bound methionine oxidation in plants upon oxidative stress using Arabidopsis thaliana catalase 2 knock-out plants as a model system. We identified over 500 sites of oxidation in about 400 proteins and quantified the differences in oxidation between wild-type and catalase 2 knock-out plants. We show that the activity of two plant-specific glutathione S-transferases, GSTF9 and GSTT23, is significantly reduced upon oxidation. And, by sampling over time, we mapped the dynamics of methionine oxidation and gained new insights into this complex and dynamic landscape of a part of the plant proteome that is sculpted by oxidative stress.

Indexed as

Protein Processing, Post-TranslationalArabidopsisArabidopsis ProteinsGene DeletionGlutathione TransferaseHydrogen PeroxideIsoenzymesKineticsMethionineMolecular Sequence AnnotationOxidation-ReductionOxidative StressPlant LeavesPlants, Genetically ModifiedArabidopsis ProteinsCAT2 protein, ArabidopsisGlutathione TransferaseGSTF9 protein, ArabidopsisHydrogen PeroxideIsoenzymesMethioninemethionine sulfoxide

Identifiers

PMID25693801
PMCPMC4424394
OpenAlexW2136659076

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.