Evidence map›Paper›PMID 25693187›Full record

ArticlePLoS genetics2015

The arabidopsis DNA polymerase δ has a role in the deposition of transcriptionally active epigenetic marks, development and flowering.

Francisco M Iglesias, Natalia A Bruera, Sebastián Dergan-Dylon, Cristina Marino-Buslje, Hernán Lorenzi, Julieta L Mateos, Franziska Turck, George Coupland, Pablo D Cerdán

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
7.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
  2. The tomato gene Ty-6, encoding DNA polymerase delta subunit 1, confers broad resistance to Geminiviruses.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
    Article
  3. Article
  4. Review
  5. Article
  6. A splice site mutation in theHorticulture research · 2023
    Article
  7. The unequal functional redundancy of ArabidopsisFrontiers in plant science · 2023
    Article
  8. Article
  9. A Mutation in DNA Polymerase α RescuesInternational journal of molecular sciences · 2021
    Article
  10. Article
  11. Review
  12. Article
  13. Plant DNA Polymerases.International journal of molecular sciences · 2019
    Review
  14. Article
  15. Review
  16. The Plant cell · 2018
    Article
  17. Review
  18. Ctf4-related protein recruits LHP1-PRC2 to maintain H3K27me3 levels in dividing cells inProceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

Francisco M IglesiasFundación Instituto Leloir, IIBBA-CONICET, Buenos Aires, Argentina.
Natalia A BrueraFundación Instituto Leloir, IIBBA-CONICET, Buenos Aires, Argentina.
Sebastián Dergan-DylonFundación Instituto Leloir, IIBBA-CONICET, Buenos Aires, Argentina.
Cristina Marino-BusljeFundación Instituto Leloir, IIBBA-CONICET, Buenos Aires, Argentina.
Hernán LorenziJ. Craig Venter Institute, Rockville, Maryland, United States of America.
Julieta L MateosFundación Instituto Leloir, IIBBA-CONICET, Buenos Aires, Argentina; Max Planck Institute for Plant Breeding Research, Cologne, Germany.
Franziska TurckMax Planck Institute for Plant Breeding Research, Cologne, Germany.
George CouplandMax Planck Institute for Plant Breeding Research, Cologne, Germany.
Pablo D CerdánFundación Instituto Leloir, IIBBA-CONICET, Buenos Aires, Argentina; Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires, Argentina.
Fundación Instituto Leloir · ARConsejo Nacional de Investigaciones Científicas y Técnicas · ARMax Planck Institute for Plant Breeding Research · DEJ. Craig Venter Institute · USUniversity of Buenos Aires · AR

Funding

Yale University Clinical and Translational Science Award ProgramUL1TR000142 · NCATS · YALE UNIVERSITY · PI SHERWIN, ROBERT S · 2012 to 2015
$31.8M
NCATS NIH HHS UL1 TR000142
6 · The paper itself

Abstract

DNA replication is a key process in living organisms. DNA polymerase α (Polα) initiates strand synthesis, which is performed by Polε and Polδ in leading and lagging strands, respectively. Whereas loss of DNA polymerase activity is incompatible with life, viable mutants of Polα and Polε were isolated, allowing the identification of their functions beyond DNA replication. In contrast, no viable mutants in the Polδ polymerase-domain were reported in multicellular organisms. Here we identify such a mutant which is also thermosensitive. Mutant plants were unable to complete development at 28°C, looked normal at 18°C, but displayed increased expression of DNA replication-stress marker genes, homologous recombination and lysine 4 histone 3 trimethylation at the SEPALLATA3 (SEP3) locus at 24°C, which correlated with ectopic expression of SEP3. Surprisingly, high expression of SEP3 in vascular tissue promoted FLOWERING LOCUS T (FT) expression, forming a positive feedback loop with SEP3 and leading to early flowering and curly leaves phenotypes. These results strongly suggest that the DNA polymerase δ is required for the proper establishment of transcriptionally active epigenetic marks and that its failure might affect development by affecting the epigenetic control of master genes.

Indexed as

Epigenesis, GeneticArabidopsisArabidopsis ProteinsDNA Polymerase IIIDNA ReplicationFlowersGene Expression Regulation, PlantHistonesHomeodomain ProteinsMADS Domain ProteinsPlant LeavesTranscription FactorsArabidopsis ProteinsDNA Polymerase IIIFT protein, ArabidopsisHistonesHomeodomain ProteinsMADS Domain ProteinsSEP3 protein, ArabidopsisTranscription Factors

Identifiers

PMID25693187
PMCPMC4334202
OpenAlexW2082757857

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.