Evidence map›Paper›PMID 25692622›Full record

ArticleHuman vaccines & immunotherapeutics2015

A new vaccine escape mutant of hepatitis B virus causes occult infection.

Qing Ye, Shi-Qiang Shang, Wei Li

Abstract readCase Reports
In one paragraph

Article in Human vaccines & immunotherapeutics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Qing Yea Clinical Laboratory; The Children's Hospital; School of Medicine ; Zhejiang University ; Hangzhou , PR China.
Shi-Qiang Shang
Wei Li

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

There is growing public concern regarding assay sensitivity to HBsAg mutants in clinical diagnosis and vaccine escape. The aim of this study is to introduce a new HBsAg mutant strain. The serum samples were those of patient X at the age of 3 months and 3 years respectively, and of her mother immediately before parturition, which were used to amplify the HBsAg-coding DNA fragments by PCR. The HBsAg DNA sequences were translated into their corresponding amino acid sequences and then aligned in pubmed with nucleotide blast. The sequencing data of S coding regions shows that patient X has been infected by a new HBV variant with an A to C substitution at nt431, resulting in an Asp(GAC)to Ala(GCC) substitution at aa144 of major protein; CC to AA substitution at nt359 and nt360, resulting in an Pro(CCC) to Gln(CAA) substitution at aa120 of pre "a" epitope; A to G substitution at nt491, resulting in an Glu(GAG) to Gly(GGG) substitution at aa164 of post "a" epitope. Three new mutations (S171F, S174N and Q181R) at the antigenic epitopes of HBV presented by HLA class I molecules are found. The HBV mutant strain causes vaccine escape and occult infection.

Indexed as

Immune EvasionAmino Acid SubstitutionAnimalsChild, PreschoolComputational BiologyDNA, ViralFemaleHepatitis BHepatitis B Surface AntigensHepatitis B VaccinesHepatitis B virusHumansInfantInfant, NewbornSequence Analysis, DNASequence Homology, Amino AcidDNA, ViralHepatitis B Surface AntigensHepatitis B VaccinesAchE, acetylcholin esteraseAlb, albuminALP, alkaline phosphataseALT, alanine aminotransferaseanti-HA, antibody to hepatitis AAnti-HBc, antibodies to hepatitis B core antigenAnti-HBs, antibodies to HBsAgAST, aspartate aminotransferaseCMV, cytomegalovirusCRP, C-reactive proteinEBNA, Epstein-Barr nuclear antigenEBV, Epstein-Barr virusEIA, enzyme immunoassaygene mutationHb, hemoglobinHBsAg, hepatitis B surface antigenHBVHCV, hepatitis C virusLDH, lactate dehydrogenaseoccult infectionPlt, platelet countRBC, red blood cell countT-Bil, total bilirubinTG, triglyceridesTP, total proteinUA, uric acidvaccine escapeVCA, viral capsid antigenWBC, white blood cell countγGTP, γ-glutamyl transferase

Identifiers

PMID25692622
PMCPMC4514362

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.