Evidence map›Paper›PMID 25692519›Full record

ArticleNature communications2015

Host genetic determinants of microbiota-dependent nutrition revealed by genome-wide analysis of Drosophila melanogaster.

Adam J Dobson, John M Chaston, Peter D Newell, Leanne Donahue, Sara L Hermann, David R Sannino, Stephanie Westmiller, Adam C-N Wong, Andrew G Clark, Brian P Lazzaro and 1 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
17.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 105 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Intestinal stem cell niche: An upcoming area of immense importance in gastrointestinal disorders.Indian journal of gastroenterology : official journal of the Indian Society of Gastroenterology · 2025
    Review
  7. Article
  8. Article
  9. The effect of microbiome on social spacing inmicroPublication biology · 2024
    Article
  10. Article
  11. Recent trends in insect gut immunity.Frontiers in immunology · 2023
    Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. The impact of the gut microbiome on memory and sleep inThe Journal of experimental biology · 2021
    Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Adam J DobsonDepartment of Entomology, Cornell University, Ithaca, New York 14853, USA.
John M ChastonDepartment of Entomology, Cornell University, Ithaca, New York 14853, USA.
Peter D NewellDepartment of Entomology, Cornell University, Ithaca, New York 14853, USA.
Leanne DonahueDepartment of Entomology, Cornell University, Ithaca, New York 14853, USA.
Sara L HermannDepartment of Entomology, Cornell University, Ithaca, New York 14853, USA.
David R SanninoDepartment of Microbiology, Cornell University, Ithaca, New York 14853, USA.
Stephanie WestmillerDepartment of Entomology, Cornell University, Ithaca, New York 14853, USA.
Adam C-N WongDepartment of Entomology, Cornell University, Ithaca, New York 14853, USA.
Andrew G ClarkDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853, USA.
Brian P LazzaroDepartment of Entomology, Cornell University, Ithaca, New York 14853, USA.
Angela E Douglas1] Department of Entomology, Cornell University, Ithaca, New York 14853, USA [2] Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853, USA.
Cornell University · USIthaca College · USBrigham Young University · USUniversity of Sydney · AU

Funding

Functional /Comparative Genomic of Drosophila immunityR01AI064950 · NIAID · CORNELL UNIVERSITY ITHACA · PI CLARK, ANDREW G, LAZZARO, BRIAN · 2005 to 2016
$3.7M
The protein nutrition of the symbiotic system between /Drosophila/and its gut micR01GM095372 · NIGMS · CORNELL UNIVERSITY · PI SEARLE, ANGELA E · 2011 to 2019
$2.8M
Genetic Network Linking Immunity to Energetic Stress, Metabolism and ReproductionR01AI083932 · NIAID · CORNELL UNIVERSITY · PI LAZZARO, BRIAN · 2009 to 2015
$2.6M
NIAID NIH HHS R01 AI064950NIAID NIH HHS R01 AI083932NIGMS NIH HHS 1R01GM095372NIGMS NIH HHS R01 GM095372
6 · The paper itself

Abstract

Animals bear communities of gut microorganisms with substantial effects on animal nutrition, but the host genetic basis of these effects is unknown. Here we use Drosophila to demonstrate substantial among-genotype variation in the effects of eliminating the gut microbiota on five host nutritional indices (weight, protein, lipid, glucose and glycogen contents); this includes variation in both the magnitude and direction of microbiota-dependent effects. Genome-wide association studies to identify the genetic basis of the microbiota-dependent variation reveal polymorphisms in largely non-overlapping sets of genes associated with variation in the nutritional traits, including strong representation of conserved genes functioning in signalling. Key genes identified by the GWA study are validated by loss-of-function mutations that altered microbiota-dependent nutritional effects. We conclude that the microbiota interacts with the animal at multiple points in the signalling and regulatory networks that determine animal nutrition. These interactions with the microbiota are probably conserved across animals, including humans.

Indexed as

MicrobiotaNutritional Physiological PhenomenaAnimalsDrosophila melanogasterGastrointestinal TractGenetic Association StudiesGenetic VariationGenotypeGlucoseGlycogenLipidsMutationPhenotypePolymorphism, Single NucleotideSignal TransductionWolbachiaGlucoseGlycogenLipids

Identifiers

PMID25692519
PMCPMC4333721
OpenAlexW2033591591

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.