Evidence map›Paper›PMID 25692238›Full record

ArticleRNA biology2014

Characterization of the UGA-recoding and SECIS-binding activities of SECIS-binding protein 2.

Jodi L Bubenik, Angela C Miniard, Donna M Driscoll

Open access · hybridAbstract read
In one paragraph

Article in RNA biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Biological Activity of Selenium and Its Impact on Human Health.International journal of molecular sciences · 2023
    Review
  7. The beginning of GPX2 and 30 years later.Free radical biology & medicine · 2022
    Review
  8. Review
  9. Review
  10. Article
  11. Review
  12. Role of thyroid hormones in craniofacial development.Nature reviews. Endocrinology · 2020
    Review
  13. Article
  14. Article
  15. Review
  16. Review
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 1 country.

Jodi L Bubenika Department of Cellular and Molecular Medicine; Lerner Research Institute; Cleveland Clinic ; Cleveland , OH USA.
Angela C Miniard
Donna M Driscoll
Cerner (United States) · USCleveland Clinic · USCleveland Clinic Lerner College of Medicine · US

Funding

Translational Recoding of UGA as Selenocysteine in Selenoprotein SynthesisR01DK085391 · NIDDK · CLEVELAND CLINIC LERNER COM-CWRU · PI DRISCOLL, DONNA M · 2010 to 2013
$1.4M
NIDDK NIH HHS R01 DK085391
6 · The paper itself

Abstract

Selenium, a micronutrient, is primarily incorporated into human physiology as selenocysteine (Sec). The 25 Sec-containing proteins in humans are known as selenoproteins. Their synthesis depends on the translational recoding of the UGA stop codon to allow Sec insertion. This requires a stem-loop structure in the 3' untranslated region of eukaryotic mRNAs known as the Selenocysteine Insertion Sequence (SECIS). The SECIS is recognized by SECIS-binding protein 2 (SBP2) and this RNA:protein interaction is essential for UGA recoding to occur. Genetic mutations cause SBP2 deficiency in humans, resulting in a broad set of symptoms due to differential effects on individual selenoproteins. Progress on understanding the different phenotypes requires developing robust tools to investigate SBP2 structure and function. In this study we demonstrate that SBP2 protein produced by in vitro translation discriminates among SECIS elements in a competitive UGA recoding assay and has a much higher specific activity than bacterially expressed protein. We also show that a purified recombinant protein encompassing amino acids 517-777 of SBP2 binds to SECIS elements with high affinity and selectivity. The affinity of the SBP2:SECIS interaction correlated with the ability of a SECIS to compete for UGA recoding activity in vitro. The identification of a 250 amino acid sequence that mediates specific, selective SECIS-binding will facilitate future structural studies of the SBP2:SECIS complex. Finally, we identify an evolutionarily conserved core cysteine signature in SBP2 sequences from the vertebrate lineage. Mutation of multiple, but not single, cysteines impaired SECIS-binding but did not affect protein localization in cells.

Indexed as

3' Untranslated RegionsAmino Acid SequenceAnimalsCell Line, TumorCodon, TerminatorCysteineElectrophoresis, Polyacrylamide GelGene Expression RegulationMicroscopy, FluorescenceMolecular Sequence DataMutationProtein BindingProtein BiosynthesisRatsRecombinant ProteinsRNA-Binding Proteins3' Untranslated RegionsCodon, TerminatorCysteineRecombinant ProteinsRNA-Binding ProteinsRNA, MessengerSecisbp2 protein, ratSelenocysteineSelenoproteinsDio1, deiodinase 1Dio2, deiodinase 2DTT, dithiothreitolGPx1, glutathione peroxidase 1PHGPx, phospholipid hydroperoxide glutathione peroxidaseREMSA, RNA electrophoretic mobility shift assayRNA-protein interactionsRRL, rabbit reticulocyte lysateSBP2, SECIS binding protein 2SECIS-binding protein 2SECIS, Selenocysteine Insertion SequenceSec, selenocysteineseleniumselenocysteineselenoproteintranslation

Identifiers

PMID25692238
PMCPMC4615290
OpenAlexW1906547115

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.