Evidence map›Paper›PMID 25691642›Full record

ArticleAntimicrobial agents and chemotherapy2015

Assessment of SYBR green I dye-based fluorescence assay for screening antimalarial activity of cationic peptides and DNA intercalating agents.

Rakesh Bhatia, Ankur Gautam, Shailendra K Gautam, Divya Mehta, Vinod Kumar, Gajendra P S Raghava, Grish C Varshney

Abstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Rakesh BhatiaCell Biology and Immunology Division, CSIR-Institute of Microbial Technology, Chandigarh, India.
Ankur GautamBioinformatics Centre, CSIR-Institute of Microbial Technology, Chandigarh, India.
Shailendra K GautamCell Biology and Immunology Division, CSIR-Institute of Microbial Technology, Chandigarh, India.
Divya MehtaCell Biology and Immunology Division, CSIR-Institute of Microbial Technology, Chandigarh, India.
Vinod KumarCell Biology and Immunology Division, CSIR-Institute of Microbial Technology, Chandigarh, India.
Gajendra P S RaghavaBioinformatics Centre, CSIR-Institute of Microbial Technology, Chandigarh, India grish@imtech.res.in raghava@imtech.res.in.
Grish C VarshneyCell Biology and Immunology Division, CSIR-Institute of Microbial Technology, Chandigarh, India grish@imtech.res.in raghava@imtech.res.in.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The SYBR green I (SG) dye-based fluorescence assay for screening antimalarial compounds is based on direct quantitation of parasite DNA. We show that DNA-interacting cationic cell-penetrating peptides (CPPs) and intercalating agents compete with SG dye to bind to DNA. Therefore, readouts of this assay, unlike those of the [(3)H]hypoxanthine incorporation assay, for the antimalarial activity of the above DNA binding agents may be erroneous. In the case of CPPs, false readouts can be improved by the removal of excess peptides.

Indexed as

AntimalarialsBenzothiazolesBiological AssayCell-Penetrating PeptidesDiaminesDNAFluorescenceIntercalating AgentsOrganic ChemicalsQuinolinesAntimalarialsBenzothiazolesCell-Penetrating PeptidesDiaminesDNAIntercalating AgentsOrganic ChemicalsQuinolinesSYBR Green I

Identifiers

PMID25691642
PMCPMC4394797

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.